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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0158100.1

ATGGCATATGATATAACAAGCACTACAAATAGATAATTAATGGACATGCAGGTTGAAATTGCTGCCTGAGTTAATGAAACCGAAGCTAAATTGTCTGCAAATCAAATAACTAAAGTCTACTGTATAGACGGTACACAACAACTTGCAAGCAAGAACACCCAACTTTTCTCCCTGAACCAAAGCCTGGATAACAGGTGCATCTTCACTTGGATTCACTAGGCAGTAGCCACTGGACGTTGAGTTCTCTACAAGGTCAAACCAAACTAATCAAACTTTGGCACCATTTCTCCACAAAGTTTCTACATCAACACTTCTATAATTGTCAGGTACACCCAGTCCTGTTCAGCACTTGAGATATTTTTCCTTAGAACACATTAATTAGAGTTGGACGCCGCCCCAAGTGTTGAATTCTGAAACTCTGAATTAATCTACCAGGAGATGAGCACACACAGGACCTAGCTTTTCCCTGTTCAGCTCGTCAAGCAATATGAAATGAACCCAATTGTACTTCCACCTCTTCTACCTGTTCACCAGCCTCTTCCACCGCAACAATTCCATTACCACAAGTAGTTGGGGTTGGTGGCACATCACCCACGGTTAAAATAGCTATTCAAATCTCTTTGAGATACCTTCCGTCGCTGATTTTCAGCCACCAGGAAATCAGTAATCGAGAACCACAGCTCGCTTGCTCAGCTCCTCGATAGGCTCCTTCCACCAGCTCGAATGCTCGATGCGACGCAGACACCGAGCGCACGCAGCCGCCTCCCCCACCGGCCGCCGCTTGCCTCCACCGCTCCACGCGCCTGGCTACCCAGTCGCAGCCTCCCCGCGCTTCTACGGACTGTGGCGCCCGCACCCCCATATGCTGGCCGCCCAGCGGAGCCCTCATCAGCCACCCCCCGCTGGCCGCCCGGCCGCCGGCGGGCGGCGGCGGCGGCCGGTCGCCAACAAGGCGTTGCCGTTGCGCTCGCTGCTGGGGTTGGGCTCAATCGCACAAGGAGTTG

Coding Potentia
Explanation CPC Score
noncoding -1.34864
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0158100.1 2 11428774 T G
Osa02LNT0158100.1 2 11429080 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0158100.1 osa-miR5816 Translation 4.5 8.852 1 24
Osa02LNT0158100.1 osa-miR528-5p Translation 4.0 14.868 1 21
Osa02LNT0158100.1 osa-miR1425-5p Cleavage 4.5 16.633 1 21
Osa02LNT0158100.1 osa-miR1861n Cleavage 4.5 16.431 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0158100.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0158100.1 2 qCTB2a Resistance or Tolerance Cold tolerance RM324 RM301
Osa02LNT0158100.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0158100.1 2 tgw2 Morphological trait Seed RM290 RM550
Osa02LNT0158100.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus