>Osa02LNT0158200.1

CCTGTACAACAAATACCATACAAATCAGAACTCTTCAAATCCACACTTTCCCGAAGAATGAATGGCCTTATATTGCAATTATTCGCTGACTAATTTCTATGCCGCAGTAAATTCTTAGTTACCGAGAATCTCTGTGCTGCTGCAAAATTCAGAAATGGAACTGAAGACGTCGAAAAGAGCCTTGAAAATAAAAATCCCTTGTTTGACTATAAGCTGGTAGCTGATACTCTCACAGGCTTCAAAACTCTTAGTACCCTCCTAGCATGCTCAAGAATAATATAAAATACTCCAAAGAAGAAAAGCAAAATGAGTTGCAACTTCCCAAGTAGATTGTATATAACGATGATGTTGCATTCTCGTTTAGCAAGACGACTATCTGATCCAGCAAGAAGTAGATCATCAGACTTCTTAGGAAGGTTTGACCATTCCCCCTGATCTGTATTTGATTTTGATGCTTTTATCATCTCCATGAGGGACATATTAACCTCAGCTGTTCTTTCGTGGCTCACCAGGTGGCCTCCATGGAGTTCAACCAGTTTAGCAGCAGGCTGGAGCTTCTCTGCTAGTCTCCTTGCATGATACAACTGAGCTACAACATCATCCCTTCCGTGTATAACTAGAATAAGAAAACCTGATGAACGAATCCGGTCTAGTTCTTTCTGTGTAAGCTTATGCGTCCAACATGCATTCAGTTGTCCTTCATATCCATGTCTTGATTGCATTCCACATGATGACAAACCTTTCACATATTCCTGGTAAAGCATTTGTCTTCTGGTATTTGATCCAACAATTTCATCGAGGTACTCCCTCGTGTAATGAACATCAAGATCAACACCAGCTCTCTGCTCTGGAGTTCTTGCTCTTAGAAAACGACATGCGAGGGATATGGTCTGCCAATCAATCTTGGGGATACATTGGTAGCCACCTCCGGTGGTGTTGAGCAACGCCAGCGAAGCGACACGCTCCGGCGCAATGGCGGCCAACTTGGAAGCTATCATGGACCCCATGGAGTGACCGAAAACGTGTGCTTTCCGCCACCCTAGATGATCCATTAATGCTAGCGCGTCCTTCGCCATGATCACCGTGGTGTACTGCGATTTGTGCGGCGGCACGGAGCTCCGGCCAATGCCGCGGTTGTCGAAGCAGCAGACCTCGGCGCCCTCCCCGGCGGCGCCATCGTCGCCGGCGGGGGACTCCTCGTCGACGGGCTCGACGGCGCCCGTCAGGCCCTTCACCTGCGGGCCCCACGACTCGTGCGTCCCCGCGAACCCGATGATGAGGAGCACCTTGGTGCCGCCATGGCCGTATCTCTGGTAGAAAATCCGCACATCTCCCTCCTCGCCGGCCGCCGCCGCCGCCGCCGATGGGTCGCCGTGGCTGACCACGCAGTACGGCATCCTCCCTATCGCGTGCCGGAGGGCGCCGTCACGGGCTCGCGGCGGCACACACACAACCAAGGTTTTTTCCCTCCCTTTTGGGCCTTGGTTGCTTCGCCCGCCGGCCGCCGATCGGTCGCCCCAAGATGTGCAATTCGCCGACCAACCAGCCAACCAACCGGACACGC

Explanation	CPC Score
noncoding (weak)	-0.981479

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0158200.1	2	11484514	C	T
Osa02LNT0158200.1	2	11484947	A	C
Osa02LNT0158200.1	2	11485384	G	A
Osa02LNT0158200.1	2	11485944	A	C
Osa02LNT0158200.1	2	11486797	A	T
Osa02LNT0158200.1	2	11487652	C	T
Osa02LNT0158200.1	2	11487169	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0158200.1	osa-miR6246	Translation	4.5	19.85	1	23
Osa02LNT0158200.1	osa-miR160a-3p	Cleavage	3.5	21.667	1	21
Osa02LNT0158200.1	osa-miR160b-3p	Cleavage	3.5	21.667	1	21
Osa02LNT0158200.1	osa-miR160c-3p	Cleavage	4.5	21.667	1	21
Osa02LNT0158200.1	osa-miR160d-3p	Cleavage	4.0	21.667	1	21
Osa02LNT0158200.1	osa-miR172d-5p	Translation	5.0	18.524	1	20
Osa02LNT0158200.1	osa-miR5518	Cleavage	4.0	15.764	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0158200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0158200.1	2	qCTB2a	Resistance or Tolerance	Cold tolerance	RM324	RM301
Osa02LNT0158200.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0158200.1	2	tgw2	Morphological trait	Seed	RM290	RM550
Osa02LNT0158200.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus