>Osa02LNT0158500.1

ACCAAACATGGAATTCAATTTTGAAATGTTTATAGTAAGAATCAAATTGGGGGTAATGTTCATTGTATTGTTAAGCACATAATGAAATCATATGGAATAACACAATCAATACAGTAACGCTAGTCGATAGCCTAGCAATCTGAATTGGATTTCGAACATAAATGTTCAGAACTGCTTCCATGACAAGTAAGAGGCCAGCCACATCGGTTCATCATCAATGTCGAAAGGATCAGGAACCAGCCTCCGGTTGGATGAACTGCTTCAGGATTTGGAAGATGCTTTACTTCATCATTCATCCAGAAATGTGTGGACAAAAGGCCCACTCGAGATTCCAGTGCACGGAGCTGCTCTTTTTTTCTTCTGCTAGTCATCAAAAAGGGTAGAGACAAGCAGGTGCTGTACAAAAGATGATCTCACTGCAGCTCGCCTCCGCCTTCTCTCCCTTTCTTCCTGACTAAGATTAGAATCAGAGCTTGCCTTCCAAGTCTTTGAAGGCAGTGTTCTTTTAAACCAATTATTTTCTACCACAGCTAGAGCAGAAAATTTCGCTGTATCTTCGGCTTCGGATGAAGATAAATTTAAAACAAGTGAAGATAGTAGTGAATCAGTGACTGAACTTGCTGCATTGGTACCACTGCTTCGACTACTGTTTCCAAGAAGAACCTTTAAGTAGGTCTCCTGTAGATCTCTCCCTCCAAGGGAGAGAGCATGGTTGCTAGGAACAGCAACTCTGCGTAATCTGTGATGTCTCTGCAGTCTAAACAGGTAGCTGTGCTGAAGGGTTATGTGATCCAATAAGTCCTTTGAAATCCTAGCCGAGCAAACCGGGCAAGCCTGTGGAGAGTATACAAGTATGGTTAGGGAGTAGGAACTACAGAATATATCATATGGAAGGAGTATTAGGTCCACCTCGTTATTGTACCAAAAGCTGGCTGACTTTTTTAATTTATAAGCCCTGAATCTGGTTTTTGGCTTAATCCTATATAAGAACTGTGTAAATATCTTGCTTGTGTGCATCATGATGTTGTTTTCACTATTGAAATGAACATATTCGGTACTAAATCACGTTACTGACAAATGTTCATGTCTTCAGAAAATTGATAGCACCAAACTTGACTATAGTTCGATACTTCGATGCACCTTCAGAAGGAGCTTGATTTTTTATACCAGCAGTTTCCACAGTTTCCAGTATAACCGTGTTCCCAGTTAGTCCAGCGCAGTATGCCAATCCCAAACCAACCCTTAGTCCCCTTAGTATAGTATCCTTATGGCAAAAGGAACAATTGAGTTCTAATTGTCTGGTCTGGCTAGAAAAGAAGATCTATGCCTTAATTGTATGTTCTGTCTTTAAAATGAATATCTAGGCATTAGTGTTTTCTTTGTCCTAGATCAAATACTGTCTGTTAAATTAATCATTTTAGAGAGAGATTAAACTATGCAAATAACATATTGGTACCTGGGTATTGCAAGCCCAGCCTTTAAACATTCATAGAGAAACCTCTCAACATTTAAATGGATCATTTAAAGAGATGACATTGGATAAGAATTAAAACAAATCATTCCTGCAGCATACAACTATAAATTAAGTAACAAATTATACAGCATATGCAACACAACAAATTAAGGCAATCATATCAGAACGGTCCAATACACATCAAAGTTAAACTTTAACCTAAAGGTTCATGTAGCCAATGTGTAACAACTGCAAAATATGAGTATTTCCATTTAGCTTCTTCTCACAATCTCTCTCCATCATTTATGTATTAATTCAATATCTCCATGTAGTAACAAAACACTGATTATTCACAACGAAATTTAGTAACCTACTCGAGTTCTACAAGGTTAATCTATGGCTATCCAAAATGAAAGAAACAAAAGGAGTGGATATGATTTCTCACACATTTGACTGACTTCAGATAAAAGAAGCATATAAGAAAATACAGAAAGAGAGTAGAAAGCAGAGATACTTACCACAACTTTAGACTCAAAGGGGTGCTCATCCTCTAAATGGGCACAAAGAGATGTAATGTCATGATCTTCATAGCAGTAAGGACATGGGAAGTCTGGCCGTACCTCGTCCTCTGGCTCAACATCATCGTACCCATACCGATCGAGGTGGGAGTGCGACGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGTGGTGGTGATTCTGGGCGCGCTGCAGCGCGTACTGGCGCTTGGCGGCCATGAGGCGGGAGATCCAGTGGTCGGAATCCATGGCGCCGCGGGCTCCTCCTCCTCCGCGGGTCGCCGCCCGGATCTCCGCGTATCGTCTCGTCTCCTTCCTCTCGTCTCGTCTCGTCGCCTCCCCCTCTACACGGCACCACCAACCAAAA

Explanation	CPC Score
noncoding	-1.11156

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0158500.1	2	11883141	C	T
Osa02LNT0158500.1	2	11883045	T	A
Osa02LNT0158500.1	2	11883443	C	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0158500.1	osa-miR5793	Cleavage	4.5	14.573	1	21
Osa02LNT0158500.1	osa-miR171f-5p	Cleavage	4.5	14.803	1	21
Osa02LNT0158500.1	osa-miR413	Cleavage	4.5	20.303	1	21
Osa02LNT0158500.1	osa-miR415	Cleavage	4.5	14.553	1	21
Osa02LNT0158500.1	osa-miR396e-5p	Cleavage	5.0	18.501	1	21
Osa02LNT0158500.1	osa-miR529b	Cleavage	3.5	11.325	1	21
Osa02LNT0158500.1	osa-miR1860-5p	Translation	4.5	20.214	1	21
Osa02LNT0158500.1	osa-miR1879	Cleavage	4.5	13.455	1	24
Osa02LNT0158500.1	osa-miR396f-5p	Cleavage	3.0	17.691	1	22
Osa02LNT0158500.1	osa-miR396h	Cleavage	5.0	18.501	1	21
Osa02LNT0158500.1	osa-miR396d	Cleavage	5.0	18.501	1	21
Osa02LNT0158500.1	osa-miR396g	Cleavage	5.0	18.501	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0158500.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0158500.1	2	qCTB2a	Resistance or Tolerance	Cold tolerance	RM324	RM301
Osa02LNT0158500.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0158500.1	2	tgw2	Morphological trait	Seed	RM290	RM550
Osa02LNT0158500.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus