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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0158600.1

CCCAGCCAGAAGGGTCTCCTGCACTTTAACCAAGTTTACAAGAGATGGAGGCCTTTCTGAGAGGAAAGCACCTCCTACATTTGGCAGCAGGCGACCAGATATGAATAAGAAACAGAAGCAAAATACTACACGATCAGCAAAGGCTATATGACGACACTGTTACAAGAGCTCCAGTTCGTGCCAGAATATCATGTAAACAAAAAGACAACATTATGTCGGCACCAGGCAACAAGAGTGTTTGCTTCGAACCAGCATCCTTCCACTGAATGGAAAAAAAAAGGGGGAACATTTCAACTGGAACTTCCCCATATCTTTTTTAATCATGGATTTTATTTCGTCAACACTTGAGCCCTCACAGCGGCCTCCATTCATCGCAACGGACCATGCAAAACCGCCAAAAATATAATGCAGGAGGTTCCCAAAACGTTTGTTCGTGAGCCAATGCTTCACTGCTTCTGGCCGGATCTGTGTTCAGTAATTCTGGTGGCGCTGATACGTCCAATTTTGACACCCAGGAATAGCATATTTCCAAGATCTTGGATCCCGTAGTTTAGGCCCTTGTCTTATCTCAGCAGGAGGAACCACCGCAACAAATTGCCGCAGCTCCGCTGCTACAGTAAATCCGACCAAGCCATCAGTGGCAAAGCCCCGATCTCCTCCTCCTCCTGGCGTCCGCACGAGAGGCGGCTGTACCTCCTCTTGCTTGCAGTAGCCATGGCTCGTAGGTAAGGTTGGATCTACGGGAGTGTCCAGATCTAGGGAAGAGTGAGATAGAGCAACAGGGAGAGAGATGAAAGGGGAAGATGAACGGTGAACGGAGAAG

Coding Potentia
Explanation CPC Score
noncoding -1.09656
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0158600.1 2 11895335 T C
Osa02LNT0158600.1 2 11895540 A G
Osa02LNT0158600.1 2 11896326 T C
Osa02LNT0158600.1 2 11904359 T C
Osa02LNT0158600.1 2 11905017 A G
Osa02LNT0158600.1 2 11895119 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0158600.1 osa-miR5798 Translation 4.5 12.708 1 21
Osa02LNT0158600.1 osa-miR1861e Cleavage 5.0 15.991 1 22
Osa02LNT0158600.1 osa-miR1861k Cleavage 5.0 15.991 1 22
Osa02LNT0158600.1 osa-miR1861m Cleavage 5.0 15.991 1 22
Osa02LNT0158600.1 osa-miR5149 Cleavage 3.5 21.951 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0158600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0158600.1 2 qCTB2a Resistance or Tolerance Cold tolerance RM324 RM301
Osa02LNT0158600.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0158600.1 2 tgw2 Morphological trait Seed RM290 RM550
Osa02LNT0158600.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus