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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0158600.2

CTCCAACAATACCATGGTAGTAGTGCAACAAATGCAAATTCTTAACGCAACAAAAAGAAATGTTCTTCTGTTACAGAAGAACTACACTTATTGTAACAACTCTATGAAGCCAAAAACATTTTTTTTTGCTGCTTTCGAGAACTAAACATTACTTGCATCAGCACTCGAGAAACTTGTCTTATCTCAGCAGGAGGAACCACCGCAACAAATTGCCGCAGCTCCGCTGCTACAGTAAATCCGACCAAGCCATCAGTGGCAAAGCCCCGATCTCCTCCTCCTCCTGGCGTCCGCACGAGAGGCGGCTGTACCTCCTCTTGCTTGCAGTAGCCATGGCTCGTAGGTAAGGTTGGATCTACGGGAGTGTCCAGATCTAGGGAAGAGTGAGATAGAGCAACAGGGAGAGAGATGAAAGGGGAAGATGAACGGTGAACGGAGAAG

Coding Potentia
Explanation CPC Score
noncoding -1.00398
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0158600.2 osa-miR1857-5p Cleavage 4.5 19.837 1 21
Osa02LNT0158600.2 osa-miR5149 Cleavage 3.5 22.262 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0158600.2 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0158600.2 2 qCTB2a Resistance or Tolerance Cold tolerance RM324 RM301
Osa02LNT0158600.2 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0158600.2 2 tgw2 Morphological trait Seed RM290 RM550
Osa02LNT0158600.2 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus