>Osa02LNT0158700.1

CTACACGTTTCTCCGTGGAGACATGGTGTGCTCATCGTTGCACTTGACCTTGCTCATCTGGCAGGCACCACGCAAGCACTTATACGTCAGAATCATACAGCCAATTCATTGCTGACAAGAACTAGGTTTTCACAGCACAACTTGGCACGGACAGACAGGAACTCTCACTTGTGTCTACTCCACAAGACACTTCGATTGCGCCAAAGCAAGAGCGAAATTCCACACTTAAAGTTATGAGCGATCATTATCCTTGAACTCTTCAAAACAAGATTAACACAAACTTATTTACAAGCACTCAAGTCTTTGAGGTCACGTGTTACCGAATGGCGACATATGTACAGTACCATGGCGGCGTAGTGACATCAAACAGTCGCATTCAGAGCAGACCACATAACTGATAACTACATGATGAACTTACGCCAAGAACAATATCAAGGGGTGCACTATACTCCGCCAAGGTTAATGATAGTTCACCGAGTCGACAACATCACCAATCCATCCAGGATGGAACTTTTATTCCCTTCTGCTTGAAGCCCTTTTTCACATCTGAATATAGATCTTCAACCCTTTTCTCTGTCTGCTTTGCAAATGACCACATTTTGTATATACTAGACTCCATCTTTCTTGATTCATCAATTAGAATTTGAACCTTTCTCATATCTGAATGTAGACCCTCTACTCTTCTCTCTGTATCCTTAGCCAATGACCATAATTCACGAACATTAGAGTTCATCTGTCTTGATTCATCCATTAGAACCTGAACCATATTAACATCTGAATGCAGAGCGCTGACTCTATTATCTGTATCCTTTGCCATTGACCATATATTGTGAATATTGGAGTTCATCTTTCTTGATTCATCCATTAGAATTTGAATCTCCTTTTCCATTGCCTTGATAGTATTATCAGAATATGAGCCACAAAGTGATTCCTTGATATTCTCATGCTCATTGATCAGGGACTGAATATCCAGCCCCATTGCTCTCACAACCTCTCCATCCTCCTCCAAAGGACCACTTTTCCCATCCAATGGTTTTGAATTGTTATCCCACATAGACTCCAGCCTGGCGAGCTGGAGCTTCAGCTGCTCGATATCCGACCGCACCTCGCCGCGGAAGGCACCCTCTCCGTCATCGGGGACGACGACGGAGGCCGCGGCGCACTCCCTGGCGTGGTCGCGCGGGAGGGCGAAGATGGCGGCGAGGAGCGCGGCGGAGAGCGCGAAGGCCGCGCAGGGACGGCGGAGGTCGCCGGCGCTGCCGGTGAGGCTGAGGCGGGCGAGGAGGGAGAGAAGGCGGAGGGGGAGGAGGAAGGCGACGACGGCGGCGAGGATCGCCGCGTCGATCCTCAT

Explanation	CPC Score
noncoding (weak)	-0.580099

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0158700.1	2	12010912	A	T
Osa02LNT0158700.1	2	12010913	T	A
Osa02LNT0158700.1	2	12011843	T	C
Osa02LNT0158700.1	2	12012173	A	G
Osa02LNT0158700.1	2	12014263	G	A
Osa02LNT0158700.1	2	12008886	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0158700.1	osa-miR5526	Cleavage	4.0	9.32	1	21
Osa02LNT0158700.1	osa-miR5822	Translation	5.0	14.486	1	21
Osa02LNT0158700.1	osa-miR5833	Translation	4.0	24.101	1	21
Osa02LNT0158700.1	osa-miR1432-5p	Cleavage	4.5	14.549	1	21
Osa02LNT0158700.1	osa-miR810b.1	Cleavage	5.0	14.363	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0158700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0158700.1	2	qCTB2a	Resistance or Tolerance	Cold tolerance	RM324	RM301
Osa02LNT0158700.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0158700.1	2	tgw2	Morphological trait	Seed	RM290	RM550
Osa02LNT0158700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus