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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0158900.1

AAATTTGTTCTGCGAGAAGAATTATGCAAATAAAAGCATCGAATTAGGTCATTAGTAGTTTATCGAGAAGGATACAACACTAGATAATTAAGTTACCTTCAGAGTTCAGACGTTGATCGTTTTTTTTTTCAAACTCTTGATTGTTGTGAACAGAGTTCATTCAAGTGTTCTACACAATCTAAAGCCAACTTCTAACAGAGAAAAAAAATGCTTAAGTATGCAAGAGACAGTAATAAAAAGGGAGAAGTCCGAATTACTCTCCTAGAGTATAAATTACTTCCCTAAACTACAAAACAAGATATTTTCACCCTCAACCATTAATACTGGATGAATTACCTCTCTTGACTCAATTCAGAGCGGTTTTGTCCTACGTGGCGTCTACATGACAGACCAATCCAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGGCAACCTCACCCATCTCTCTTTTCTCTCTCTGTTGAGGCAGGCAAAGTGAGGCGAGGCGGACGACATTGCGGCCTTGAGGGGCGTCGAGCTTGGCGGCGGGCGTGAGGGTACTGCGGCGCCACGGGGGGAAGGGGAACAGCTGCCGGGACAGGAGCTGGGAGGCGGCGATAGAGATGGACCTCGGCGTGGCAGCTGGCCATCGCCACAGACAACACCACCAGCACCTGCACGGGCCTGAGTCACCGCCAGCGCCACTCCCTCTCCCCTCTTCCTTTCTTCCTCGTTCTAGCAGTCGACAGGCGACGGTGTGATGGAGTAGACGGCAGGGGGGAGGCTGGCTCTCCGTGCGAAGGGAAAGGCGCGCAGCGGCATCGGTGGTGAAGGAGATGACGAGGCTGAAGCGACTGACGCAAATGGGCGCGATGCCAAGTTGCCTTCGTCATCGTCGCCGCCCACCACCGCCACTCCGAGTTGCCTCTCCCATCCCTGCACGTCGCCGCCGTCCTCGGCTCCCCCTCCGTCGTCCCTTGCCTGCCTCCGTCGTCCTCGCCCGTTGCCGCCGTCCTTAGCTCCCCCTCCGCCGTTCCCGCTCGCCGTTACCGCTCCGCGCGAGTTCCCTCCCCCGTCCTTGCCCGCCACCGCTTTGATTTGCCTCTCCTGTCCCCGCCCATCGCCACCGTCCTCGACTCCCTCGCCGCTGTCCCCGCCCGCCGCCGCTGTCCTCGGCTCCTTCTTTGCCATCCCCGCTTGCCGCCACCGCTCTG

Coding Potentia
Explanation CPC Score
noncoding -1.13315
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0158900.1 2 12409878 G T
Osa02LNT0158900.1 2 12410634 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa02LNT0158900.1 DTM_#DNAt_MULE_japo_Os0166 Chr2 . 12409676 12411050 970
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0158900.1 osa-miR5530 Cleavage 5.0 23.224 1 21
Osa02LNT0158900.1 osa-miR166b-5p Cleavage 4.5 24.382 1 21
Osa02LNT0158900.1 osa-miR166d-5p Cleavage 4.5 24.382 1 21
Osa02LNT0158900.1 osa-miR435 Cleavage 5.0 13.112 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0158900.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0158900.1 2 tgw2 Morphological trait Seed RM290 RM550
Osa02LNT0158900.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0158900.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0158900.1 2 qSS-2 Physiological trait Sterility RM301 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus