>Osa02LNT0159200.1

GAAAAATGTATACCCACTTCTTCAATATTATGTCCAAACAAAGGGAAAAGAAAAGGACCGGCTTATTCTCAGTCTATCCTGCTGTCAATTCCTTCATCAGATGCATGTTATGTTCTCACTTCCTTCCAATCTTGACCTTGCCCATTGTGATCTACTGATCTGTAAGGCTGTGAGAACCTTTCAAGAGACAGCTATTGCCTGCACAACATACATATGAACTAATTTTTCATTAGTTTCTGAGCCCGTGAAAATTGAGTCCATCTGGTCAGAAAGAGGTGCTCCAAATTGCATCATCCCCTTCCTTCATCTTGAGTGCGCATAAGCTTGCTAACTGGATTGCAAACCACTCCACACTGTACCTCTAATTGTTTTCCACCGACCGCATGGTTGCCTGAAGATGAATTATTGCGAGCTGAATAACATGGAAAATTCTGGTATGCAATCCAAAGGTGTCAAACCTTGGATATGAGATTGATGTCAATGGAGGTGCGAGCAACAGTCGACATAGTAGTTGACCCTAGTTCCGAAGCACGCACAGGATGCAGCAGGACCACGGCGCCCCTCCCCTACCCGGCTGTGCTCTGCTTGCCGCTGACATTCCCACCAGCTTCGGCTTCTTTTTTGGCCTTGGCTCCAGCTGCGGCCACTCTCACGTCGTCCTCCTGTGGATGGACTCCAACCTCGCCCCGTAGATCGTTGCGAGATGTTTCCTTAACAATAGATTATATGTGCTTTAGGGTTGTGCATCTCTTCACTTAAACCAAAATTTTCCAGAATAGAAGCAACCAATGTGGAGAAATAGTGTACAGCATAGGAGCCAACCCCTACCACAGATCCATAAATTGTGAGGTAAAATAAACTTTTCCTTCCCATTGGTAACAATTTCATCCCCTATAACGAATAATAGGTCACACCAACAATCAATTTGATAGAACACATTTTTCCATAAGCAAAAAAAAAATCCTAGTTAAAATTGAGTCACTGAACGTTCCTTATCAAAAGAAAATGGTATTACTTCTTGGTCTTCCCACACAGTTTAGAGTTGCCTCATGGTGTATTTTACAACAAACTAACAAAATTACAACAAAAACTATCTTCGCTAATTAGAGCAAGAGATTTCTATGTTTAGACTGGAAAATTCTATAAATAAACTCAGAGTGAGGTGTTTAATAACAAAATACAGTAAGTTAACTTAACAATTTCATATACTTAATAATAAGCTTGATGGAAGTTCCCAATAACAAAATGCAGTCAGTTAACTTAACAATGTTGTCTGCTGATAAGTAATCAATTAGACCATCATGTTATGTAGAAGACTGTCAAAAAAACACAGAAAAAAATAATAATAGGACATTGGAACCATAAAAGTTTGAAGATACAAACTTACAAGGGGATTATGAAACAACACAAATATGCGAACCATACGAAAATCCAAGTGTTGCGCTAAAAGGAATATGTAAATAAAAGGACTATACACGAAAAGAAGTTCATACCAAGCACAGAGATTAATCGAAACAAAGTGGGTACGGTCTAGCTATTAAGAGATGTTATTCAGGTAAAAATCATCCATCTGTATACTTCGTAAAACGGGAATACTTATCCTTCAACCAAAAAGGCCGAAACCACCAAATACAAAACAAATTTTGAGACATTACCGAAATGCATTGGTTTTGAAGTGAAAGGAAAGGCATGTTACTGCAGATTTATTCACGGCAAAAGAGTTGCAACTTTCCAATCACCCCTCCACAAACCCACTCCAAAACCCAATTCTATGACTAAACCCCAAGAAAACCTAAAATACCAAGATGCTATCAGACGCATCTTACAGCGAAAACCCCAAACCACCCCAAAGGCCCTAAACCCTATATAGAACGGCGCTACGATCCCCGTGCAAACGCAGCAGCAGTCCCAAATCCGCCCATGGTGCACCAAACTGCGGGCACGATTATACCTTTGATGGACCGCCCCACGATGGTGGAATCGAAGGCCGCGGTGTCATCGCCAGTGGAGATGATGATGGGCGCGGCGAGCGAGGCTAGGAGTAGGAGCGGATTTGGGAAATCCCATGATACACAAGCGTTACAAATAAATAATGATTTACACAGTACAGCAAGCAGTGCAATGGTTTCTACAAATATAACCGGATTTTAATTTCATAGGCAAATGAAAGACAAGCATAAATTCTACAATGTCAGATAATTCAAATTGTATTGTCATGCTCCACTAAGTAATGATTTTAATGGAAGAATGTTGAAAAAAAAGTAATAAGATTTCTGCCAGAAAACATAAGTTTCAGTTCAGTACAAACCACCCATACCAAGAGAATAGCACCAGTTTTGAATGATCCAAGTGATAGCATCTCAATTCCTGAATGCAGAAAGCAATCCCCAAAACATTGTTTGCTAGCCAATGCTTCTTCGCAGAATACCATATGCAAAAGAAAAATCCTGGGATCGATGTAACAACTTGAGACTTGGTAAACTCCACTAAGAGCGAGTGGAAAAAATGCAGCACGCTGAATGATGACATTATCATTCCATTCTTTTGGAAGAAATCATTTCATGGAAGGCAGCAATGTTGCACTGCAAGCTTTTGTGTACATCATTGATTTATTTTCCTAATGATCGTGAATAATGGCACTACTGGAACTCGCCTTCGATTTAGCACAACACTAATGAGGTAAATTAGAACATGGACAACCAGACAACTACCCTACCCCTCATTAAAAATAAAAAGGCCCAAACCTCCTGTCCCACCTGATGCTGGCCTCCTCCTTTGTTCCCCATCACATCGCTCCAGCCGCTGCTGCCATCTCTCCCGCGCAACATGGTCAGAAATCCGGCCACCCTCACGAGATGGCCACTGGGAAGAGCCTTGGGGATGGGGCTTGGACGCCGCCAGCCACCTGCCTCATGACCGCTACGAGCAGCGGAAGCAGCAGGTCGAGGAACTGCCACCAAGGTTGAGCGGCCATTGCTGTCGCCGATTGAACCGGTAATTTTTTCTCTGTTGTGAAAGGGATGAACACCGCGGCAAAGACAAGGGGAAGGAGGATCTGAGACCCTTAGCCTCCCTGTTGTGGCCGATTCGTCCCCTTGTCATCGTTGACAATGGTGGCAAGCTGCTCAAGGAGAGCTCGATTCTGTGTCCGCTAGATCAACCACAAGCAAAAGTCAGTATTGCTTGAGATCACAACACACAATCATCACAGCTGCACACCTTGGCCCTTGGGGCGAGGCGGCCCATGAGAGTGGCGGTGGCATTGCCGGCATTGTTCTCCTCAATGAAACTGATTGTGGAGTTCATTATGAGCAGTGTGATGATGCCCACGAAGTCCTGCCAGCCCGGCAGCTTCCTACTCCATTGGCGAGAGCGATGGCCATGATCGCCGCGGCCTCCATGACCCAGGACAGCGGGTTCGACATGAACCCCAAGAACCTCAAGAACTTGCTTTCCTTCTTCTCCTTGAGCTTGTTGGGGCCGAAGAGGTTGAGGCACTGCTCGGCATTGGCGGAGGTGAGCCAGCCGGAGACGGCGATCGACAGCGACGACAGCAGCGGCAGCGCGAGGCGGAGGCGGCCGGGTAGAGCAGGAGGTGGCACCGCGATGGGGAGGCGGCGGCGGCGTCGGCATCGGCGTCGGCGGGGGTGGAGAGGAGTGTTCGCCTCCTCGCTTTCTCCATGTTCACCTCGAAGCCCACGCTCGGCGGAAAGGCGTCGGAGCGAGGGGAAGGCAGAGGTGAAGGCACTCGGAGACGGCGACACGACGGCGGCGTCGGTGGAGGTGGAAGCGGCGGCGCGAGGGCGAGGCAGATGTGGACGCGGTGGCGCGAGGCGAAGGCGGAAGTGGCGGCGCTCGGCGGCGACGGCGACGACGGTGGCGGAGGAGGGGAGGCGGGCGACAGCGGCTAGGGTTAGGGGTGAGTGGACCGGCGGCGGAGGAGGAGGATGGCTGAGGGAGAGGGAGGAGGGGCGGCGGCGGCGTTCGGCGGCGGTGCGAGGGGGAGGCGGTGGCGGCGCGAGGCAAGGCAGGAGAGGGAGT

Explanation	CPC Score
noncoding (weak)	-0.703461

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0159200.1	2	12416990	T	C
Osa02LNT0159200.1	2	12418745	G	A
Osa02LNT0159200.1	2	12419150	C	G
Osa02LNT0159200.1	2	12418941	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0159200.1	osa-miR5537	Translation	4.5	12.004	1	22
Osa02LNT0159200.1	osa-miR5540	Cleavage	4.5	17.837	1	21
Osa02LNT0159200.1	osa-miR5795	Translation	4.5	13.883	1	22
Osa02LNT0159200.1	osa-miR5837.2	Cleavage	5.0	10.027	1	21
Osa02LNT0159200.1	osa-miR166h-5p	Translation	4.0	8.696	1	21
Osa02LNT0159200.1	osa-miR1871	Cleavage	5.0	12.037	1	24
Osa02LNT0159200.1	osa-miR1871	Cleavage	5.0	12.52	1	24
Osa02LNT0159200.1	osa-miR1877	Cleavage	5.0	17.814	1	24
Osa02LNT0159200.1	osa-miR1846e	Cleavage	5.0	8.394	1	20
Osa02LNT0159200.1	osa-miR812o-5p	Translation	4.5	20.563	1	21
Osa02LNT0159200.1	osa-miR5157a-3p	Cleavage	4.0	12.689	1	24
Osa02LNT0159200.1	osa-miR5157b-3p	Cleavage	4.0	12.689	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0159200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0159200.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0159200.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0159200.1	2	tgw2	Morphological trait	Seed	RM290	RM550
Osa02LNT0159200.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus