>Osa02LNT0159300.1

CCTCAAAGCAGATCCTTCCATGAAGCAGGTGGTCCCAGTTCACCAAATAATTACAAAATGTGATGCATATTTTTGTGCTGATCAATAAAACAACAAAATTTAGATATCAAAATCTGCAACAATGTAATGATGGTATGCTTACTATATTAAATGTTTGTGAAGCAACTTGTACATCCCATTGGTAGCATATAGTACATCCGTAGCTCTAGGAGGCTTTGATGGAAAAAAGACCATATCTGTCTGTGCTATGCCATTGCTTTCTAACGTTTCTGAAAGTTGAGAAATTTTATGGAATAGCCAAAGATGAGAACAAAGGCGGCCATAAAGCCAAAATGGGCAAGTATAACATATCCTAGGAAGTCATGTCGGACGCCAACATTATCTTCCAAAATTTGGCTCATTGCTACATGGCTCCCACCAGGAACTGAAATCGATCCACCGTTCCCTCCAAACTGTGATGCAATGACACCATATATTGTCCAGGATACTGGGTTTGCCCAATAGTACCACCTCCACCAAATTGGTATTGCCTTCCTAAAAATAAGGAACCCAGCAAACAAGTTCCAAAGAGGGAGTGCAAAGGTTATGAGAATGTTCGCAAGCAGTGCAGATGGGGTGCATGCCACCAACATCATTCCGAAAAATGTGAAGTAGTTGAAGCTTGAAACAATGAAGAATAGAAAATAAAAGAATTTGCTAGCTTTCCAATCGTATCCGATCATTGCATAGATGATGACCGTGTACAAAATCCCTTGTATGATATTGTAAATGAACTCCACGCTTGCCTGAGCAAATGCATAGGACAATGGAGAGTACATTCCTGCTGCGCTTTCACGATAGTAAACTGCTCTCTCAATTGATACAACAGGCTGAACTGACATGCAGTTAGTAGCCCCAATGAAGAAGATTGCAGCATAAGTGGCTCCGAGTAAATTGTACAAATCTTGCTGTGAGTCTAACTTTGTTCCTTTTTGCCAAAATACTGTGCCAAAGAAAAGGCCATAGAGAAACGTTGTTAGATAACGCAAGCTATTGTAAGATGGATTCTTCCAATAAGACTTATATTGCTTCCATAAGTTCGCAACACATTGGATATAGAAACTTTGAGAATATTTTGTAGCAAATAAGAGATCTCGATAGCCTGGTGGGGGAATGCTCAACTCCTCAATAAGTTCTTGGTTTTTCCTATAAAGCAGGGAATTGGCATAAATTTCAGCAAAATCTACGTTCATGCGAGCTTCTTCTAGAGTGGAGCTAACTTCTAGCATCCATGTTGCAGGATTATATCCTTCTGTAATACTTGGAACACCTAAAATTGTCTCAAAATATTCAACTAGTTTATGTGAGTGGTCACCAAGTTCACCAGCATAAATAACCCGACCTCCTCTTTTCAAAAGCAAAAGCTCATCAAAAGACTCAAAAATATCAATGCTTGGCTGATGGATCGTGCAGACCACAGTACGCCCAGTGTTGACAGTATTTCTCACAGTTCGCATGACAATTGCTGCAGCTCTAGCATCAAGACCAGAAGTAGGCTCATCCATAAAGATGATTGAAGGATTTGCTACCAGCTCCACAGCAATTGTTAATCGCTTTCTTTGTTCAGTCGATAAACCGCTAACTCCAGGGAGACCAACCATAGCATTGCACAATACATCAAGCTCTACAAGGGCCATGACCTCCTCCACAAACATCTTTCTTGTATTGCTATCAACATCTGAGGGAAGGCGCAACCAAGCAGAGTAGAGAATGGATTCATATACAGTAACATTTGGTGAATGGATATCAGCTTGTTCACAGTAGCCGCTAATGCGAGCAAACGTTTCTTGTTTCTTGGAGTAACCAGAAAGGGTTATGCTTCCTTCAATTGTTCCACTAGTTTTCCTTCCTGCTAAGACATCCATCAAAGTGGTCTTTCCAGCTCCACTGACACCAACTAATGCAGTTAGAAGACCTGGCCTAAAAGCACCACTAATATCAGAGAGCAGTTGGAGACGACTTTCCATGAGTCCTTGTTGCTTCATTTCTGAGGGCATGTCCACATAATAATTTAGATGGTTGAAACAAAGTGACAATGGTTGGAAAGGTAAGACAAATTGTGACTGAGTTGGCCTATTTCCTTCTCCGTTAGCACTCGTAGGTATCGATGATGTTGTGGTGGATGTTCGGGACCTATGCTCTTCATTTCTTGTTTCCGTGTACAACTCAGTTTCATTGTGTTCATCAATAACTAGTGCGTTTGCACTTCTAATAGGACTTAAGTATGTAAGTGCCAAGATGTATAAGGTGTTGAACAAAATAATGAATCCTACTAGGGCTCCAATGGATAGCCAAAATCCCCACTCTCCAGTGAACAAGCCTTTTGACTTTAGAATAGCCTCACCTACCGTTTTTGCATCAATGGTTGTGTCATTGTTTGGAATGGCCCACCTACTGGCCAGAAATTCGTTGATCGATATTGCATTTTGGCTATACATCATAGGAGATGCCCAATAACACCAGATCCACCATGGTCTAATGTCATTTTTACGTATCACAAATCCTCCAAAGACGAAGACAATAAGCAACACAAGCATCCCAAAACTAATTGCTATAACCATTGTTTGCAAGATAGCACCAAGAAATCGAAACAGAGCCATTGCCATTAGGTGAGTAACGAAGAAAGCTAGAAACTGACGAAAGAACCTTCCTGCTGCTGGTGCAAATCCCATCACATAGTACGTGATGACAACCCAGACCGTAGCCTCCACAAGAGATACAGGAACCTTTATTAGTATATTTGCAACCCCAAAGGTCCATGGAGGGAAGAATAAAAAATCTCTATGCTTGTAGAACACAGGAAGCTTCTTTACTGTCAAGTTTAGCTCAGAAAGGCCATTGAACATGACTGTTATTAAATTGAATGTCAATGCCCCAAGAAATTTAGTGCCATCAGAAAATTGCCCATGGGGCATCTTTGTTCTAAGAAACACGGTCATAGACAAGAAAGCAAGAATGATCAATTGGGTGACCTTGAATATGTAAAGAAAAGAGTTGCGTTTCATCAACAACTTCTCTCTACAAAGCACAGCCTTCAATGACTCCCAGTTGGATAATGCATTTTTCATTGTTGTCAGTGCAGCAGGATGGATTTTTGATTTTTCAAATGGAATATGTTGCTCCTTCATCATTTGTTGGCCAATATAAAATGACTTGAAACGTTCTGCAAACTCTGGGACTGACACATAACAATAAGGCTCCTTGTCAAGGAACCAATATTGTTGCTGGTCTTTCTTGGAAGTGACCTCTTGAAGGAAGTCAGCCACTGCTTTCCTTTGAGGGCATCGAAAGCCAGAAGCTTCAAAAAATTCCAATATATTCTCGCGTGGCCCATGATAGACTATGTATCCTTCTGATAGTAGAACTATGTCGTCAAAGAGATTATATGTCTCTGGCGGTGGTTGGAGGAGAGAGATCATCACAGTTTCATTCATTATATGGACCAAATGCCTAATAAATTTTACAATATGAAATGTGCTAGAGCTATCCAAGCCAGTGGATATCTCATCCATGAGCAAAGCCCTTGCCGGTCCTGTTAACATTTCCCCTGTTGTCACACGCTTCATTTGTCCACCAGAAATTCCTCTAATCATCTCATCACCAACAATAGTATCAGCGCAAATGTCCAGCCCAAGCACCTTGAGAATAAGATCTGTTATGATATTAGTCTCTTGTCCTTGCATTGCAGTAGCTTTCATGAAAGCATCGATCTCAGGGTCTGGCTTAATGCCTGCATTGCGTTCCCTTCTAGAGATTTCCGTGAGCATGTCGTATCTTGACCCAATACCTAAGCACCACCTAGAGAAATCTAATGTCTCTCTTACGGTCATCTCTGCATTATGGAGATCATATTGACTAACATAGGCACTTGTCCGCTCTGGATAGAACTCGGAAAATTTATGTCCACAATAGGTGATATTACCAAATACCTTGAGGTTTTTATCAAGTTTCCCAGTGAGCGCTCGCATAAGTGTGCTTTTTCCTGATGATGGAGGTCCAAGAAGGAGAGTCAT

Explanation	CPC Score
noncoding (weak)	-0.207008

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0159300.1	2	12663637	T	A
Osa02LNT0159300.1	2	12664136	A	C
Osa02LNT0159300.1	2	12666195	A	G
Osa02LNT0159300.1	2	12667302	T	G
Osa02LNT0159300.1	2	12667732	A	T
Osa02LNT0159300.1	2	12668466	T	C
Osa02LNT0159300.1	2	12669430	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0159300.1	osa-miR5528	Cleavage	4.0	10.394	1	21
Osa02LNT0159300.1	osa-miR6251	Translation	4.0	13.712	1	21
Osa02LNT0159300.1	osa-miR1861d	Translation	3.5	19.33	1	22
Osa02LNT0159300.1	osa-miR1861e	Translation	5.0	19.33	1	22
Osa02LNT0159300.1	osa-miR1861g	Cleavage	5.0	19.528	1	22
Osa02LNT0159300.1	osa-miR1861k	Translation	5.0	19.33	1	22
Osa02LNT0159300.1	osa-miR1861m	Translation	5.0	19.33	1	22
Osa02LNT0159300.1	osa-miR1866-3p	Translation	5.0	14.81	1	22
Osa02LNT0159300.1	osa-miR1862e	Cleavage	4.5	18.317	1	24
Osa02LNT0159300.1	osa-miR2874	Translation	4.5	15.811	1	24
Osa02LNT0159300.1	osa-miR5488	Translation	5.0	18.45	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0159300.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0159300.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0159300.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0159300.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus