>Osa02LNT0159500.1

CACCATATTATTTTGGACATGACACAATCCTCAAGTTGCTGCATTGAGTAAGGGCATGATACCAGTCCAGGAAAGCACACGCACGCGCGCGCACACAATGCCATGTTATCAACCCTGGAAATTTTTACTGTGTATTGATGCCAAACTTATATCTTGACAGATAGCGTCGCAAAAATTCTATGACACCTCTTTATCTGTCTTCGGATGTACTCGAGTTGAAGCCAGTATTACAAATCATACCTTCCAAATTGCAAGTTTAGATTCGCATAGCTGACAGTTTGCACCACTTTGCTTCGCAAACCATAACAGTGATGGCTCCGGGAATTTGAAGCATACAGTTACTTGTGAACATCTAACGTGCACATGGAATCATATACTAGTTAAATGCACATCTTTAGAACTACATGGAGACTGATCAGATATGCTCTAAATCTGTAATTTAGTGAACTTGGCAACAAAAAGGCCACTCGTTTGTGAAGTTGCAGGATCAAATCGCAATGTTTTGAAGATGCTGCCACTTCTGCAAGGCCAACTGTCAGCTGAATCAATCTTTTGTAGCTCTGCATGTTTGCAAAAGAAATCCCAGAAGGTCATCAGGGCAGATCTGTTGAACTTTGACAACTTCAATGAACCAAGACAAACTAAATAATCTTGTTATAAGTAAGGTTCACTTAACCACACCAAGAAGTGAGAACAAGTACACTACTAAAGATTTCCTGACTAGAAGTACCACAATCAATTTAATCAGTCCATTTGAGAAAAATAACAATATTCATCTTCAAAGTAAAAATATAAGGGATATACATAATACTGAAATGAGGAACACGGCTATTCTGTACCTGCTGAAGAGTGTTTGCAAAGAAACTGTTGAACCACATTCTCATTTTGTGCAACTGTCAAGCTATTTCAACGCAAGCCATCAGTAGTTAAGTAAGACACGAAATGCAATAGGAAAAGGTGACTACACAGCTGGGAAGCGATTGAGGAGGCATCAAATATTGGAATTGCATGTGAAGAGATTACTCACCTGCAAGTACTATATACTAGTGATCCACCAGTTTTCAATAATTTAAAACCATTAGTGAGAAGGCGTAACTGAAGATGAAGCAGGTCATCAGTTCTTTCTGCATCAAGTACACGACGATCTAAGGTTTTCCATCCCCAGAACTCAAATTTTTGGATGTGCTTTATGGATCCATCATGAGTACATTCTGCATCAACTAGGACTTTGTCATAGCCAGATGTCTGGGCTTCATCATCAGCTGATGGACGAATAGCATCACATTTGCGTAATCCAACTAATCCTGAATGTTTGCCATAGTATATCAGTTCAGGTTCTGAAGTTGATGTTAGATGAGGTGAACCCGCCATTCTTGCCTTTTTAGACTTTTGTCGGTCTTTCCACGATCTCTTTGAAGTCCATTCCGACAATGTACTTCCATTGTCCTTATGACAAGTTGATCCTTCTCCATTACCCAAGCTAGAGTTCACAGGTAATATAGAAAATGAAGTCCCATCGGCAACAAAGAGACGACAACGATCTCCGAGAGAATACTTCTGCAACATCGTACGACAGGCCGCAAGACGGTGCTTTGCAACATCAACGCCAGTCAGAGAACCTCTGCCTCCAAGCATATCTGCAAGCATGCAAAGCTTTGCACCTGGGGCAGCACAGAGGTCCAGAACATGTTCTCCTGGTTGAACATCAAGTGCTAAGACAGCAGCTCCAGAAGCTGCATCAATTCCATAGATCTTTCCTTGCTGATAGGCCATGGAGCTAGCAATCTGAACTTGAGGCGGAATTGCGTAGAAATCTGGCAGCCATGAAACCTTGTTGAGATGGCACGTCAGCTCGCTCTGAATCTCTGGAATATGGGGCTCCATGCCTGGTTTTAGCCTTATGTATCGTGGGATGGTGTCGACCATGGAATACATCATTGGGTCCAAGCCATTCTCCTGGAGGAACTCGAGAAACGCGGGCGGCAGCGATTCAGGGGCGGACCTAGCGTCGGCCATGGGGGCTCAGCCGAACACCAAAATGGATAAATTCGAGATTTAAACCGCTGCCTGCTACTAGAAGTTTCGCGGCGAGATTTGAACCAAGGTGCCAGCCGCTCGCCGCGCCCGCTCCGTGCGTTCCCGGACTCGGGGAGCGGCGAGATTCAGCACAGGAAGCTGCGGCGCGGAGGGACGCCGGCGTTGGTTGGATTCGCCGCGACGAGCGGAGGAAGCGGTCGATCCAGACCTCCCACGAGACGAGAGGCCGGGGAGGGGAGCCACGCATACGACGGCGGGACTCTTTGAAGATGTGTCGGCGAGTCGCTGCTGGCCGGAGGGCGGCGCCGATGCGTGACTGACAACT

Explanation	CPC Score
noncoding	-1.14326

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0159500.1	2	12759606	G	A
Osa02LNT0159500.1	2	12760300	A	G
Osa02LNT0159500.1	2	12762201	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0159500.1	osa-miR5797	Translation	5.0	18.801	1	21
Osa02LNT0159500.1	osa-miR5079b	Cleavage	4.5	20.965	1	22
Osa02LNT0159500.1	osa-miR1428a-5p	Translation	5.0	23.331	1	21
Osa02LNT0159500.1	osa-miR2098-3p	Translation	3.5	17.239	1	20
Osa02LNT0159500.1	osa-miR5079a	Cleavage	4.5	20.965	1	22
Osa02LNT0159500.1	osa-miR5487	Cleavage	3.0	10.545	1	21
Osa02LNT0159500.1	osa-miR5487	Translation	4.5	14.968	1	21
Osa02LNT0159500.1	osa-miR5524	Cleavage	5.0	19.028	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0159500.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0159500.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0159500.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0159500.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus