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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0159500.2

CACCATATTATTTTGGACATGACACAATCCTCAAGTTGCTGCATTGAGTAAGGGCATGATACCAGTCCAGGAAAGCACACGCACGCGCGCGCACACAATGCCATGTTATCAACCCTGGAAATTTTTACTGTGTATTGATGCCAAACTTATATCTTGACAGATAGCGTCGCAAAAATTCTATGACACCTCTTTATCTGTCTTCGGATGTACTCGAGTTGAAGCCAGTATTACAAATCATACCTTCCAAATTGCAAGTTTAGATTCGCATAGCTGACAGTTTGCACCACTTTGCTTCGCAAACCATAACAGTGATGGCTCCGGGAATTTGAAGCATACAGTTACTTGTGAACATCTAACGTGCACATGGAATCATATACTAGTTAAATGCACATCTTTAGAACTACATGGAGACTGATCAGATATGCTCTAAATCTGTAATTTAGTGAACTTGGCAACAAAAAGGCCACTCGTTTGTGAAGTTGCAGGATCAAATCGCAATGTTTTGAAGATGCTGCCACTTCTGCAAGGCCAACTGTCAGCTGAATCAATCTTTTGTAGCTCTGCATGTTTGCAAAAGAAATCCCAGAAGGTCATCAGGGCAGATCTGTTGAACTTTGACAACTTCAATGAACCAAGACAAACTAAATAATCTTGTTATAAGTAAGGTTCACTTAACCACACCAAGAAGTGAGAACAAGTACACTACTAAAGATTTCCTGACTAGAAGTACCACAATCAATTTAATCAGTCCATTTGAGAAAAATAACAATATTCATCTTCAAAGTAAAAATATAAGGGATATACATAATACTGAAATGAGGAACACGGCTATTCTGTACCTGCTGAAGAGTGTTTGCAAAGAAACTGTTGAACCACATTCTCATTTTGTGCAACTGTCAAGCTATTTCAACGCAAGCCATCAGTAGTTAAGTAAGACACGAAATGCAATAGGAAAAGGTGACTACACAGCTGGGAAGCGATTGAGGAGGCATCAAATATTGGAATTGCATGTGAAGAGATTACTCACCTGCAAGTACTATATACTAGTGATCCACCAGTTTTCAATAATTTAAAACCATTAGTGAGAAGGCGTAACTGAAGATGAAGCAGGTCATCAGTTCTTTCTGCATCAAGTACACGACGATCTAAGGTTTTCCATCCCCAGAACTCAAATTTTTGGATGTGCTTTATGGATCCATCATGAGTACATTCTGCATCAACTAGGACTTTGTCATAGCCAGATGTCTGGGCTTCATCATCAGCTGATGGACGAATAGCATCACATTTGCGTAATCCAACTAATCCTTTTTAGACTTTTGTCGGTCTTTCCACGATCTCTTTGAAGTCCATTCCGACAATGTACTTCCATTGTCCTTATGACAAGTTGATCCTTCTCCATTACCCAAGCTAGAGTTCACAGGTAATATAGAAAATGAAGTCCCATCGGCAACAAAGAGACGACAACGATCTCCGAGAGAATACTTCTGCAACATCGTACGACAGGCCGCAAGACGGTGCTTTGCAACATCAACGCCAGTCAGAGAACCTCTGCCTCCAAGCATATCTGCAAGCATGCAAAGCTTTGCACCTGGGGCAGCACAGAGGTCCAGAACATGTTCTCCTGGTTGAACATCAAGTGCTAAGACAGCAGCTCCAGAAGCTGCATCAATTCCATAGATCTTTCCTTGCTGATAGGCCATGGAGCTAGCAATCTGAACTTGAGGCGGAATTGCGTAGAAATCTGGCAGCCATGAAACCTTGTTGAGATGGCACGTCAGCTCGCTCTGAATCTCTGGAATATGGGGCTCCATGCCTGGTTTTAGCCTTATGTATCGTGGGATGGTGTCGACCATGGAATACATCATTGGGTCCAAGCCATTCTCCTGGAGGAACTCGAGAAACGCGGGCGGCAGCGATTCAGGGGCGGACCTAGCGTCGGCCATGGGGGCTCAGCCGAACACCAAAATGGATAAATTCGAGATTTAAACCGCTGCCTGCTACTAGAAGTTTCGCGGCGAGATTTGAACCAAGGTGCCAGCCGCTCGCCGCGCCCGCTCCGTGCGTTCCCGGACTCGGGGAGCGGCGAGATTCAGCACAGGAAGCTGCGGCGCGGAGGGACGCCGGCGTTGGTTGGATTCGCCGCGACGAGCGGAGGAAGCGGTCGATCCAGACCTCCCACGAGACGAGAGGCCGGGGAGGGGAGCCACGCATACGACGGCGGGACTCTTTGAAGATGTGTCGGCGAGTCGCTGCTGGCCGGAGGGCGGCGCCGATGCGTGACTGACAACT

Coding Potentia
Explanation CPC Score
noncoding -1.14131
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0159500.2 2 12760300 A G
Osa02LNT0159500.2 2 12762201 G C
Osa02LNT0159500.2 2 12759606 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0159500.2 osa-miR5797 Translation 5.0 18.801 1 21
Osa02LNT0159500.2 osa-miR5079b Cleavage 4.5 20.965 1 22
Osa02LNT0159500.2 osa-miR1428a-5p Translation 5.0 23.331 1 21
Osa02LNT0159500.2 osa-miR2098-3p Translation 3.5 17.239 1 20
Osa02LNT0159500.2 osa-miR5079a Cleavage 4.5 20.965 1 22
Osa02LNT0159500.2 osa-miR5487 Cleavage 3.0 10.545 1 21
Osa02LNT0159500.2 osa-miR5487 Translation 4.5 14.968 1 21
Osa02LNT0159500.2 osa-miR5524 Cleavage 5.0 19.028 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0159500.2 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0159500.2 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0159500.2 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0159500.2 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus