>Osa02LNT0159600.1

CAGAATACTAACTTTTCTTATTGGCAGCCAGAGAATGTCTCTCGTCAAATAGGAACTACTTTTTTTTTTTGCTTTTGGGGCAAAGAACTATTTTTTCTTTCCGAACAAACTAAAGATATGCACATCATTTCATTACTAAGAAGAAGATACACATAGGAGGAGAATCCAGAAACTCCCCACCCTAAACACTTAAAAACAGAAAAACAAGACCACTTGAGCCGCAAGGGCCATAGACCTAGCTCTGTGAAGCTCCGGCTAAGCTCCAAAGTATGCCTTCATTTGTTACTGTTTGCAGCACCACTGACACCCTCAGAATTGAGCTATTGAAAGCTCATTCATGTGTTTCACAATTTCTTGGTTACATAACTAAAGAACTATTGCGTGGTTACATAACCATGAAATAGCAGCAGAACACCTGCTGCTGTTATAAATTCCCTCCATGTGTCCTTAGTGCCTTCCTACCTCAGACCTTGCAGCAATCATTGATTTCCAAATGAAAATCCTAAAGGAGGGCAGTAATGCATCTTGCACTCTGTTGAAATCCCAAGCAAGGGAACTCACAGTCTGATATTCCATTGTGTAATGTGCACAAAGTGAACTCCAACGTAAAATGATATACAGCATAAAAGCAGAAGGGCAACACCAATGACAAACCCATAGCCCACACCTGCCTTATGGCCTCTTAACAAACTCCTTTCTTCGCAGGACTTCCACATTTACTTTAATGGATTTCAATTCACTTCTCTTCTACCCAGAACAAATCAATAGTTCCAATTTACCAATAGTATGTGCTTGGTCTTGGCTTTTTGCACCACAGATCCATTTTTAAGCAGCTTAAATGATAAAGCCAGTCAAATGCTTCCCGCCTGTTCTCATCTTGCCTACAGTAACCGATATGTTTCCTAGATCCACAAGGCTTCAGTTTACTTCCTTTTCAACATCGCATCCAGAATAAGGTTTAGCTTATAAAAAGTTCTATAGTGACAATAGCCAACCCTACAGAATGTTCTAATTGTAAGGTCAAAAACATGATGATCAGGGACAAAATCTTTTCCATCAAATATGCGATTGATTTCCCATATTTTATCAGCATAAACAAGCCTGTTGAGAAGGACAGTAAGAACATCCATCGATAGCCCACTTGTAAGTGATTTAAGAAAACAAGCAGTAGCTGCATCAAATTTCCTTTCTCTGCATAATCCATCAATTATTATAGTATAGGTGACTTCATCTGGAGCAATATTCTTTTCCTCCATTACTGAAATTAAGCGATTCGCTTCAGTTAACTTTCCATGGTAGTAAAACCAATGAAGGAGTATATTGTATGTCACCACATTTGCAGCAAATCCTAGACTATGGATCAAGCTCTTGGCTAAGGAGGACTTTCCCCCAACACAAAGACTACGAATCAAAATGTTGAACGTCCTTGTGTTTGGCTCGATACCTTTTTTGATCATATCTGTTAATAGCTTCATAATACCCCTCCATTTGCCCATCTCACACAAACTGCTCATTACAGTGTTGTATGCAACAACACCAGCATACCATTTCAACTCTGTGCTCCTCTCTAACAAGTATATAGCATCCAAAAGTCTTGAGGAATGGCAAAGGCAATTCAGAAGAATACTCCAAGTATAAGCTGTGGGTTCCAATCCCTCACCTAACATAACATCCAACAGCTCAAGTGCTTCCTTAGCCTTACCTTTCTTGCAGAGGCCATTCATATATATATTGTACGTGACCGTACTGGGCTTCCAATCTTTGGTACTACTTTCCATTAAAACCTGTTCAACTTCATCAAATTTGTCATCATCACACAAGGCCCTGATTAGAACATTGTATGTGACGACGTTGGGAAGGCAGCCAAGACGTTCCATCTCGGCCATCAGCAGCTTGGCCTCCACGATGCGGCCATCGCGGCAATATGCTTGTACTATGGGCGTGTAAGTCTGCACCATCGGGCGGCAGTTCTTCTCCAGCATCCAGTCAAGCACGCCCCACGCCTCAACGATCTTACCTGCCCGGCACAGGCCCGCGATGAGCGTTGAGTACGTACCAACGTCAGGCTCCACCCCGCTCTTGTGGATAAGCTCCCAAGCAAGGTCAAACTCCGACCGCCTTGCGTGCATCTTGATCAGGATGTTTTGTGACGACGCGTTGGGCGCTACACCCGACGCGAGCATTTCATCGAACGCCTTGAGGGCCTCCCCCTCGCGACCGGCCTCCGCGAGCGCATTGACGAGCGTGTTATAGCACAGCACGTTGGGCGGCGCGCCGCCATCACCACCGTCGGCGGCAGTCCGCTTTAGCTCAGCAAAGACAGCGACCACCTCGTCCAAGTCGCCGGCGAGCGCCAGGGCTTTCATGGCCACGTTGTAGTCTCGCTCCAGCCGCCGCCGCTTCTGCTGCTGCGTAGGCGGGGTGTTCGCCTCCGGTGCGGGAGGAGACGGGAGGTGCTTTCCGTCGTCGGAGTCCTCCGAGGAGGAGCAGGAAGGAGAGGGGAGGGGCAGGAGAGCCGCGGCGGAGGCCGAGGAGGCCATGCGCCCGCGCATCAGGAGGCGAGAGGTGAGGAGGACAGCTATGCGCCCGATGGTCACCGAATGGGGGGGGCGGAGGCCGTGGTGGCGGTGGCGGCGGCGGCGGCGGCGGCCGTAGTGGTTCGCG

Explanation	CPC Score
noncoding	-1.31259

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0159600.1	2	12810248	A	G
Osa02LNT0159600.1	2	12810254	C	T
Osa02LNT0159600.1	2	12810568	T	A
Osa02LNT0159600.1	2	12811230	C	T
Osa02LNT0159600.1	2	12811263	A	C
Osa02LNT0159600.1	2	12814920	G	A
Osa02LNT0159600.1	2	12815421	G	A
Osa02LNT0159600.1	2	12815482	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0159600.1	osa-miR390-3p	Translation	4.5	22.621	1	20
Osa02LNT0159600.1	osa-miR529a	Cleavage	4.5	21.166	1	20
Osa02LNT0159600.1	osa-miR1858a	Translation	3.0	10.804	1	21
Osa02LNT0159600.1	osa-miR1858b	Translation	3.0	10.804	1	21
Osa02LNT0159600.1	osa-miR3979-3p	Translation	4.0	7.553	1	20
Osa02LNT0159600.1	osa-miR5157a-5p	Translation	4.0	10.745	1	24
Osa02LNT0159600.1	osa-miR5157b-5p	Translation	4.0	10.745	1	24
Osa02LNT0159600.1	osa-miR5160	Translation	3.5	12.618	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0159600.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0159600.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0159600.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0159600.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus