\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0159700.2

CTTCTTCATCTTATCTCTTTTTCCTCGTTCTCCCCTTCTCTCCCTCACGGCTCACGCTCTCCCAGTGCCGCCGCTTCTTAGGCAGCGCCGGCGACGCCGCCGCTCTCCCTAGCGCCGGCTACCGCGCCCCACTCCGGCGACCCCTCAAGCAGATGTCCCGCAGCCGCGAATCGGTTTATTGGCTCCACGCTTCTCTGCCCCTAAGCTAACCCCAGCCACCAGTCTCCTGCTGCTGCTGCCGCCGTGGAGATGGCTGGTGGAAACACAGCGCAACTCCGGTGGCTGCATCCCTTTCCCCCATAGGATCTACTCTCCTCCCCTATTTTAATTTTTTGGTTACCTCGGTTGATTCTACCGTGATTGAAAAATGTGTGGTTCAGCTCCTCCTCCAGAACTCCAAGTCTTCTCTTCTACTGCTGCTCTTCTGGATCTAAGGTAATTCTCCTCCTTGGCTCTTGCTCTACTGGTAATATTTGACTGCTTCCTGACATCTTCCTTGATCTGCTTCTGGTGATTCTCTTCCTCCTCTTCAGACTGATCCTCTTGCTTGATTTTCGCTCCATCTTGCTTCTTGACCTGAGTTTCATCTCTTCCTAGAGCTGAAACCCTTCTTCATCCAAGAACTAAACAACCCTGCTTCTCCTTCAGATTTGGTTTTCCTCTCTCTGATTACTTGGCCATGGTTACTACTACTGTTGGTTCATGTATTGGTTTGAGCTGGACTTCAGTTGAGCTATTTCTCTCTGGGTGGAGCTAACACTTAAGCTAATTTTTCCTGGAGCTTGGTTCTATGGTTGTAACTACTACTGCCGCAGCTGCTGCTTGTTTTGGTTTGCACGACCAACCCGAGACTTGGGTTGGAAATGATTCACACAAATTATTTTATCAATGATAAATATTGTACTGGTGATTCACCTGCTTGCATGGCTATTCCCATCCTGTACTTGTGACACCTCAACATGGCTTGTTCGGTGGGATAACCTAAAGCTATTTGTTAATTTCCTTAATTAATGGAAAATTGGTAGAGTCTGAGGTGTTTGATACTTTTGCACTTGAATCCCTCAAGTCTGGTAAAATTGGAGGTTACCATTAGTTTAGGGACTGATTTGTAATTTGTTCTATAACGCAGGGTCCCTTTTTGAAATATTACTAATTACACGATATGTTCTCGGCTAATGTATTTGTACAATATATGAAATGCATACTGTATAATAAGATTTTAAATATATAACTATATCCATGTATGTATGGATGGTTGCAAAACTGTACTGGTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.98623
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0159700.2 2 12904074 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0159700.2 osa-miR2873c Cleavage 5.0 17.218 1 21
Osa02LNT0159700.2 osa-miR6245 Cleavage 4.5 17.676 1 21
Osa02LNT0159700.2 osa-miR396c-3p Cleavage 5.0 9.671 1 21
Osa02LNT0159700.2 osa-miR396c-3p Translation 5.0 15.041 1 21
Osa02LNT0159700.2 osa-miR1853-5p Translation 4.5 8.153 1 24
Osa02LNT0159700.2 osa-miR1879 Cleavage 4.0 15.63 1 24
Osa02LNT0159700.2 osa-miR5523 Translation 4.5 9.605 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0159700.2 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0159700.2 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0159700.2 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0159700.2 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus