\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0159900.1

GCCTTTTGTCTTCACGAGGAATACTTAATGGAAAGATATGATGACTGGAGATTGCGTGCAGTCCGCTGATTCCTGGCGCCTAGCAATGAGGCGGCCGGTCAATTACATCCATAGGACGAGCCTATGGAATACCTCCGATTAAGCTGCGCTTGTGATCGTCGTCTTCAAAATTGATTGCTCGCCGAAGGTTGAGGTTGGTGTAGAGATTTAATTATAACTATGATATAGGTGGCTTTGTTTTGCCGAAACCCGGTCACAATATATTATCACCACGTCCATACATGAATCAGGTATCATAATAAAGGGGATGACTTTTGCCTCATCGGTGCCCAGTCATATATGCCGGCCTTTATTAGATGTGGATATATCGTTACTTTTGCCTTGTCGGAACCTAGTAACGTTTATCCGCTCCTATCTGTTTGGACATGTTAATAATATCGTGACACCGGCCTCGTAAATACTCGGCCATAATTTTTATCTTCCAAAGATCACGAATAGCTCCCATGCGTGTGCATGGTAGCAAAATATATTTTGTAAAATACCGCTTAGATTGTCCAATCACCAATGAAAGTTGGACATATCTAGCGCCGTTGTTATCGGTATCATAGTAACAAATAGATGATCCAATCTCCAATGAGGGTCGGACATCTAGTTTTGAGCATAGAAAATATCAAATAGTATTCGGATAATCCGATCGCCAATGAGGACCGGACCACCCTTATACCATTGATTGTATAAATGGAGTTTGATGATAACCGTGTTTCGGCTCTCATCGATCTGGCTTTAATCATCAAGATCAAGATCGATTAAGAACACGCAGATGTTCCGATCGCCAATAAAGACCGAACATCTATTGTGTTTAATCTAGAAAATTAATATTTATTCAATGTGCTCACCATCCAACGCAAATATCCTGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.451396
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0159900.1 2 13036056 T C
Osa02LNT0159900.1 2 13036543 C T
Osa02LNT0159900.1 2 13036224 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0159900.1 osa-miR439i Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR818a Translation 4.0 18.309 1 22
Osa02LNT0159900.1 osa-miR818b Translation 4.0 18.309 1 22
Osa02LNT0159900.1 osa-miR818c Translation 4.0 18.309 1 22
Osa02LNT0159900.1 osa-miR818d Translation 4.0 18.309 1 22
Osa02LNT0159900.1 osa-miR818e Translation 4.0 18.309 1 22
Osa02LNT0159900.1 osa-miR5083 Translation 5.0 13.838 1 20
Osa02LNT0159900.1 osa-miR439a Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR439d Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR439e Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR439f Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR439h Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR439b Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR439c Cleavage 5.0 21.993 1 21
Osa02LNT0159900.1 osa-miR439g Cleavage 5.0 21.993 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0159900.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0159900.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0159900.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0159900.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus