>Osa02LNT0160000.1

ACCGCGTCGCCGTGCCTCCGCCCTCCCTCTTTCAGGTCGCCGACCCAACATCAGGTCACCGTCGCTCACGGCGCGCTTGCCTCGCAGGTCGTCGTCGCTCCGCCGCCACCCGGTCCCCATCGACCGTCGCCCACGGCGCCTCCACACCATCCCCGCATCTCCGTCCGCATCGCCTCCCTCAGCACTCGGCCCTCGCACATCCCCGCGCTCTGCGGCTCCGTATCGCCGCCCTCGCCGCATCTCCCTCATATTCTGGTTTTGTTCACTGCCGCCGCCTTGCAAGTCGCTGTCAATCCGCCGCCATTCAGTCTTCATCGTCGAGTCCCCTTCGCCGCGCACATCCGTCGTTGGAGCGAGCATCATCGTCAGAATGATGTCTTCAACCATCCTCCCTCCACTGCCGTCGCATCAGTGCCACGTCTAGCCGCCTTCGCAAGTCGCTGTCGATCCGCCGCCATTCAGTGTTCGTTGCCAAGTCCAACTGCGTCGCCGCTGTCACCATCTTCACCTTCACCTTCACTGACCTCTCCTCTCAGGAGGATGCAGCAACTGCATTAAAAAGAAGACCTTATGCTAACAAAGCCAAAGGAACCTGAGTTTCAGACCTCCCACAGGGTCCGTGCAGTCAAGAGTGAAAAGCTCTGCTGAGCTAGAGGAGGAGATGCTGGCCAACATCCCAAAATTCAGAGCACGGCCATTTAACAAAAAAGTTTTTGCCATTTCACCTGACGGATAAAGACAATGGCTATTTATCTTTAACAATAGATATCATAGACTGCAAAATTATTTCTACGCTTGGCTGAAAGGAGGACACCTCACTGCAGGTATGTCCATACACTATACATTTATATGAATCAACACAATTTAATGTTTGCTTGTGTCACAAAAACAAAATATTTCTCTGATTTAATTTGAGAATGCATCTTACAACAATTTAGCTGGCTTTCGAGCTTCTTAACCTGATGCATTCATATGTGATGCTCCTGAGGAATCCTAATATGTTTCTTGTTTTCAACTGTTTGATGAGATAGTTAATTCTATAACTGAATAATCTTCTCAATGCCTATTCAGGACAATGTGTATTTACTAATGACCTATTTCTTATTTATGTACCTTTATGCACATGTTGTTTCCTAATTCAGATTATTATAGATCCTATTGTTTCCTGTCAAAAATTTATAGCAATCTAGCTCCTATGAGTTTCCATATACATGTTATAAGAATGCACCCTGTAATATTTATGGGATCTAGAATTCAAGAATTACATACACAAAATATCCTTTCAATCTAGCTAATTATCTGCATGGTGCTGCTGATATTACTAGCTCACTTGGATATGCCACACATTAGTCCATTCATGCTACACATGCACGGATCAACAATATGCAATGGTTTGAGTTCACCTCTTGTATCTGTAATTCATTTTCTTATCTAGATAATATATGGCGTTTAGGCAGGAATGTACATATAAGTCATAGTTATGGCTATGTGAGGGATTCACTGGATTTGTGTTCAACCCTTAAGACATGTCAGGCATGTTAGGCTTAAGACATTACGATTTTTAATTTCTATTTTTTGGTACAAGAATCTCCATGTGAATTTAGGTGTATGCCTGTTTGTCAGCATCTATGATATTTTATTTAAGTTGTAAAATCTGCTCGTGTAAGTTTTGTCCATATTCAGCCAATACAGTAAGTGAACCACCCAGATTGCCTTATGTTTGGTTTGATCTCTTCTCCCTTACCCTTCACTGTGTGATATATTTTTGTCCTGTATTGATATATAAGTGATGTGTGAAC

Explanation	CPC Score
noncoding (weak)	-0.138007

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0160000.1	2	13139711	T	G
Osa02LNT0160000.1	2	13140051	T	C
Osa02LNT0160000.1	2	13140497	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0160000.1	osa-miR5833	Translation	3.0	20.362	1	21
Osa02LNT0160000.1	osa-miR172d-5p	Translation	5.0	14.736	1	20
Osa02LNT0160000.1	osa-miR444a-3p.2	Cleavage	5.0	22.042	1	21
Osa02LNT0160000.1	osa-miR444d.2	Cleavage	5.0	22.042	1	21
Osa02LNT0160000.1	osa-miR444e	Cleavage	5.0	22.042	1	21
Osa02LNT0160000.1	osa-miR1869	Translation	5.0	13.891	1	24
Osa02LNT0160000.1	osa-miR5145	Cleavage	4.5	14.205	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0160000.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0160000.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0160000.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0160000.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus