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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0160100.1

GCACAAAACAGAACCATCATGCTCAAAAATCATGATGCCAATAGTTCACCGTTACAGAACAAGACGAAGAGGTTGATAAGAAATGAGGTTCAATCGTTCCAGCACATAAATACTACAGAGAAACGAGGTTCACATCATTCTAGCACGTAGATCCGAGATGCAATGTCTTGGACGAGCCAATCGAAACCTTGAAGAAGGCCCTCCCCGGTGTGCGCGCTGCAGCCTACGATCTGCCAGTGCCGGCTTCCGTCCATCGCTTCCAAATTGAGTACCTTAGCAATTTCAGAAGGTTTGAGAGCGCCTTGAATATCTTGCTTATTTGCAAACACCAGCAATGAAGCTCCTGCTAGTCTCTCTTCTTTCAAGAGATTGTGGAGTTCAGCACGGCAATCATCAAGCCTCCTAATGTCTGAACTATCAACCACCCAAACTAGTCCATCAGTTTGCTCAAAGTAATTCCTCCAGTAAGATCGGATAGTCTTCTGTCCACCGATATCCCATATGTTCAATGAGTACTTGTGGTACTTGATGGTCTTGATGTTGAAGCCGAGGGTGGGGCTGATGACGCCGGTATCCTCCCCATTGATCTTGAGCACGATCGTCGTCTTCCCCGAGTTATCCAGCCCCACCATGAGGATGCGCATCTCCTTCTCCTTGCGCTTGATCTTCCGGATGATGCTGAGCAGCCCCATCTAGGAGGCGCTCACGGGACTCTTCGCCGCCCCCGCCGCCGCCGCCGCCGCCGCGCCTCTGGCAATGGGCAGGAGGCAGTGGCGTAGCTAGGAATTTTTCGTTTAGTAGTCCTACTTCACAAATCACAAGTTCATATTACATACCAAAATTTTTCGAACACCATAAATCCCATATACATGTTGATAAATCTGCGTTGGATACCACACATGCTAATTTTATCACTATGATTTTAGATAGAAATAGAAACAACCTATACCAAAGCCCTCAAAAAAAATTCAACATGATTATAATTTTTTTCTCAAAAAGAAACATGATTATCAAATTTTGCATTGATAGAACTTAATTGTGAAAGGGTGCATTGCTCCGATTACTATTTTAATTCAAATGAAAGCAATGTTGTATGGCATTAAAATTAGAGCTCACCTGTCATGTATGATGCGCAAGAAATGTATTTGCAGACAATTAGTTCTTGTACCACTGAAATTAAAATTGGAAACGCAAAGCCAGATCCCAACACAGCAGTAAACAATATTTGCAGAATACATTTTTGATTGATGTGGCAATCCTAATGCAGCAGTGACTCTGAAAGAGTGCATATATCTCTAGAATTGAATCACTCTTACTAATTCCTGAATCAAAATTTTTGGAGTAGCGAAAGAAGATTACCGAGTTTTCGAGAGCACAAAATTAATTAAGCTGGCTGGTCAGGGGTCATGGGATCCCGGTGCCAGCGGCCGATGGCGCCTCGGCGTCTGCCTTGCGGTGGCCGTGGTGCCTTGTCGCGGCGGTTCCTCGACCCTCTGCCGCTCCGTGGATTGAGCAGACGGGAGGGCAAATGACGGCAGTGGCTCGGCACCTCGGTTGGCGACGGACAACGGGAAGTCGGGGAGACTGAGGCGGAAGCTGCGAGACCGAGGCGATGGAGAGGTGAGCGGAAGAGCCCGGGAGGGGAGGAACAGCGACGGCGTGGGGTGGGGTGGGGGAAGGTGGCGCTGGGGAGGGGGAAGTGGGGGATCGGGTTTGGAGAGAGGACCTAGGAGGCGGCGGACCGGCGGTGGGTGGCGGACAAGGGCGGGCGGCCGGTGATCGTAGCGGGAGCAAAGCGAGGCAAAGGGGAGGAGGCCGGCCGGCCGGGGCCGCGCCGGCACGTTGATGCCTTTCGGCGCCGGTGATGCCGGGGCGGCGGCACGGGGGGGGGGAACCTGTTACCGGAGGGAGGAGGGAGGACTCTTTGGAGGAAGGAGGAGCGGGCTCGCCGGAGCCAGCGCTGGAGGGGAGCCGCCTGTCGTCGCCGCTCCTCTCCCTCGGACTGGAAATAGCG

Coding Potentia
Explanation CPC Score
noncoding -1.02173
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0160100.1 2 13180552 T C
Osa02LNT0160100.1 2 13183507 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0160100.1 osa-miR408-3p Cleavage 5.0 11.266 1 21
Osa02LNT0160100.1 osa-miR444a-3p.2 Cleavage 4.5 21.372 1 21
Osa02LNT0160100.1 osa-miR444d.2 Cleavage 4.5 21.372 1 21
Osa02LNT0160100.1 osa-miR444e Cleavage 4.5 21.372 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0160100.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0160100.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0160100.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0160100.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus