\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0160200.1

AACAATACCAAACATATAATTTGTCATAGCTTGATAAACACTTGAAAAGCTCAAAGCAAGATATTTGTATTTATGGTATTGAATTAAACCCCACAGCCTACAATATCTTATCAGGAAAAAAGACTCAGATCTTCACCAACAATACTTCAAATATATCCTTCATGGCCAGCAACTAAAAATAGCATTTACATGATCACCAATGAGGTGTATACAGCTCCTGCCGTGGGTCCACAGAAGTTCATGTGATCTGCAGTTGAAGTGGCAGCCACGAAAGGATCTACCAATCTTAAAATCTGGAGACCAATATCTTTCATGGAATTCCCTCAAGGAAAGGGTTCCACTATTAGACTTACAATCCAAAAGCTTGAGAAGACATTAGCATCAGGCATCTTCCTAAGAAACCAAATGCTCTTTTAGCCACATCAAAATTTTCAAGCAAACTACGTATGTCCAAATAAAAAGAAATAACAAACCGTCCAAGCAAGCATATGCCGATGGATAAAATTTATGAATTACATCATTAGTAATTAGAAGTCATCAGCACAAAGCAAATATTCAAACTTCCCAAAAACAATGCAAATTATCAGAGGAGAAACATCAAATTCCATGCTTATAACTTGTAGAATATACACTGGATTCAACTGATGCACTTTTTAAGGAAATGAAGCCATAGTTCCATTGTCCTGAGCTCCAAAATTGATCATTGGTATATACAAAGGGGATATTCACTTATATTTAAGTCTGCTAGAATAAAACTCTCTTGACCTATGGAGTTATATGTGCATACATACAAACTGAAAGAGACGCTTACATTTAAGCTTGAGGACATTTCAACCTGATAGGCTCATGTCAAACCAACCGTTGAAACAATTCCGAAATTAAGTGATTACCAGCTAGAGTGACAGCCAAAAGCAAGCTCAACATTGCAATGGGGAAATTGCGATTAGGGAAATCTTGCCCGTGATTGCAATTTCGGAACAAAATTTTCAAAATTTTGCCTCCCCCCCCACCGGCAAGCATATATCTCACCCGAAATTTCTCCTTTTTTCATGTTTTTGTGAATTTGGTCAAAGTTTATTCTAAATCATTCAAAATTCGTCAATTTTTCAAATAAATTCAGTGATTTTGGTTCTTTCGCCCCCTCCCCCCACGGAAAAAACCCCAATTTCTAGAATGCAAACCCTGAATATTGCAGTAAAACTACAGTGAAATACTTGGTGCACAAATGTCATTACGGGTGGCACCGCTTCAGGTTTTTTTTTTCTTTTGCAAAAATTTGAGAGCATTACATCACCTATGGCAATTGTAGATTGATGCATCCTTCCGCTGCTTGTACTCATGGTTCTGTTGAACCTTAGCTTGCTACTGCTTACAATTGAGCAAAGCATACCTCATCCAAGCTTGCTATCTTCTTTAACTCGAGAGCACTTAAATTAGTGGTATTCCCATCGATCTGTATAAATTAATTTCAGAGATATACAATTAGCAATTAACTGGCAGCGGCATAACAGCTTTGCAAAAGAAGCGAACATGATGTGTATTATTTACTTGTCACTGCAAGCAATGGTGACGTAAAGCTTCCTGCATTACCGGGCCGAGCTGATGTAGATCGAACCACTATACATGAATATTTGTCAGAACCACTATCAATGTTTGTCGTTGATGAAATCCCACTGATGGATAGGACAGATCGGTGGAGGAAGACCTTGGGGGTGCATGTAGCGACGCAACTGCTCGCTTGCGGCGGCAGGAAAGGGACCACTTGCGTTCCGGTATTTGCACGACGAGCGCGGCCGCAACGGCGAATTGCCTCTCGCTCGTGGCGGCACCAGGGGCTCCGACCTCGCCTTCGTGTATCGGTGTGCGACTAAGGATGACCGAGCTGCGGTGGAGTGTACGGTGAGGCGCTGGAGTGGAGGAAGGCTCTCGCCGGCGCAAGTGGAGGATGTTGGATCGGTTGAGTGTATTCAAGCGCTGGCGGGGGCAGGCCGCGGTTGGGGAAGACCTCGACTTCGTCGGGGGCAGCGGTGGACTTCGGCGGCCACCACGGATGGGGAAGAACTCGGCTCCAGCGGCAACTGGGGACGACGTCGGCTCCGGGGAAGACCACGGCTCCGGCGGTGGCTGGGGATGACCTAATCTCCGGCGTGGGCAGCGGGGGTGGCAGCGGAAGGGGACGACCTCGTTGCCCCGTCGCGAGGAGGAGGGAGGATGCGCACGGAGCGAGGAGACGGCGGGGATTCGTGGGTGTGGAGGAGAAGCGAGGAGGCGCGGGGATTCGCCGGGCGGCGAGGAGGAGCGAGGAGGCAGCGGCGAGGAGGAGCGAGGAGGCGGGGGCGATTTTGGGGGCGAAGTTGTCGCGGCGGGGAGGAGC

Coding Potentia
Explanation CPC Score
noncoding -1.34201
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0160200.1 2 13361517 T A
Osa02LNT0160200.1 2 13362869 T G
Osa02LNT0160200.1 2 13362930 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0160200.1 osa-miR812q Cleavage 5.0 15.751 1 24
Osa02LNT0160200.1 osa-miR396a-3p Translation 4.5 16.82 1 20
Osa02LNT0160200.1 osa-miR396b-3p Translation 4.5 16.82 1 20
Osa02LNT0160200.1 osa-miR444b.2 Translation 5.0 16.999 1 21
Osa02LNT0160200.1 osa-miR444c.2 Translation 5.0 16.999 1 21
Osa02LNT0160200.1 osa-miR1854-5p Cleavage 4.5 13.246 1 21
Osa02LNT0160200.1 osa-miR2101-5p Translation 5.0 13.8 1 22
Osa02LNT0160200.1 osa-miR2919 Cleavage 4.0 10.967 1 19
Osa02LNT0160200.1 osa-miR5537 Translation 4.5 10.978 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0160200.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0160200.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0160200.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0160200.1 2 d50 Morphological trait Dwarf nan nan
Osa02LNT0160200.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus