>Osa02LNT0160400.1

GCGAAGAAATCTGCAGCAAACTGTAAGTGTAAAACAATATGGCAAGGCGTTGCCGGCCGTCTCAAGTGCAAACAGATGGCTACACTTGACCGTTCCATCCAGGTAACAAAATACATAATATAAATCTCTTCGACAGACATCAAAGCCACACGCTAAGAACATAGAGACTGAAAGGCACGCTAACAAATAAAATTCTAAAACCCACGTAGACCTAAGTAGGGCAGGCCTACATGGTCAACCGCCACATAACCTTACCTCACAGTGACTATATCATCAATCTTCAGTATCATTCTAACACACTCGCAAGCTAGTGTGATGGCGCTTGTGCTCACCAGCAAAGGTTGCACAACGTTCTCCTCCAGGATGTTTGTAATCTGACCCTTCCTCACATTGATGCCTGCATTCTTCTCACCCTTGGCATGACGATTCCGAAGCTCAGTCACAATAGAAATAGGATTGAGCCCTGCATTCTCTGCTAATGTGTAAGGAATGACCTCAAGTGCCTCAGCAAACTCCTTGATGCAGTAACTCTCCATCCCTTGGAGCTCCTTTGCCCAAGCAGCAAGCTGCATTGACATCTCTATTTCTGGTGCACCACCACCAGCAATCAAAAACCTCTTGTTCACCAAGCACCTGATGACACAAAGGGCATCATGAAGACTGCGCTCAGCTTCATCAATTACTAACTGGTTGGACCCCCGGACAAGCACAGTAGCTGTCCTTCCCATATCCTTAATGCCCATGATCTTGACAATCTTGCTCTCCCCAACAGAAACTTCCTCAACAAGATCTGCATAACCAAGCTTGTCCTCACGGAAATGTTCGATGTTAGCAATTGGCAGGCAGTTCAGGGTCTTGGTGATGAACTCAATCTCATCCCTCTCCACATCCTTCACAACCAGGATCTTAGCCTTTGCAAGATAATGAAGTGACAAATCAGTAACTGCATCACGCAAGATGCTTTTCTGAATGAGCAGAACATTGCATCCAGAAGCCTTGATCTTCTTCACCATCCCAAGAATGTAATTGCGCTCCTCACGGAGGATGCGATCCATCTGCGCGTAATCTGATACGATGACACTCTGCTCGATGTCTGTCTTGGGAGGTGAAACTTGGAACTGTATGACAGCAATCTTAGCATTCTCGACCCGAGTTGGTCCTCCAGCAGCATGGCTAGCCTTCTTATCGAAGATGAGGCCGCGAATGAGCTCAGTGTCGTCAACGGTGCCACCAAGCTTCTTAACGACGCGGATATCTCGGAGGTCGAGGAGGTCCGGGTGAGCGGGATCAACAACGGAGAGGGCGGCATCGACAGCGAGGGGGGAGAGAAGGCTGGAGTACTGGGAAACGACCTTAGAGTTGAGTGCTGTGGATGCGGACTTGACGAGGGAGTCGCGGTCAGAGAGCTCGATGGGAATGGCCATGGCGTGGAGAACCTCAACGGCGCGCGTGGCGAGCCGGTGGAGAGCGTCAGCTGCCGCGGTAGGGTGGGCACCAGCAGAGAGTAGGGATTGAGCACGGCGGAGCAGAGATCCGGCGAGGACAACGACGGTAGTGGTACCGTCGCCGGCGGCGGCGTCCTGGGAGCGGGAGAGCTCGGCGAGCATGCGGGCGGCGGGCTGGAGGAGGGACATGCGGGAGAGGATGGTGGCGGCTATGTTAAGGCCGCGGACGTCATCCCGGCGCTTGGTGTCGGTGTAGGTCTCAGTCTTGCGGGACTGAGCGGGGGAGGCGGCGACTGCGGTGGCCATGGCGGCGGATCGAGATGGGGCGGGGCCTGGCGGCGGAGCTCTGGGAGGAGCAACAATTTCCCTTAGGGTTAAATTAGG

Explanation	CPC Score
noncoding (weak)	-0.846056

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0160400.1	2	13562322	T	G
Osa02LNT0160400.1	2	13563355	G	A
Osa02LNT0160400.1	2	13563664	C	G
Osa02LNT0160400.1	2	13563988	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0160400.1	osa-miR171d-5p	Translation	4.5	22.563	1	21
Osa02LNT0160400.1	osa-miR171e-5p	Translation	5.0	22.563	1	21
Osa02LNT0160400.1	osa-miR1432-3p	Cleavage	4.5	20.248	1	21
Osa02LNT0160400.1	osa-miR1440a	Translation	4.5	14.844	1	20
Osa02LNT0160400.1	osa-miR1847.1	Translation	4.0	18.906	1	21
Osa02LNT0160400.1	osa-miR2118a	Cleavage	4.5	19.449	1	22
Osa02LNT0160400.1	osa-miR2871a-3p	Cleavage	4.5	11.022	1	21
Osa02LNT0160400.1	osa-miR2871b	Cleavage	4.5	11.022	1	21
Osa02LNT0160400.1	osa-miR812n-5p	Cleavage	4.5	23.507	1	24
Osa02LNT0160400.1	osa-miR3982-3p	Translation	5.0	13.151	1	21
Osa02LNT0160400.1	osa-miR5514	Cleavage	3.5	21.945	1	21
Osa02LNT0160400.1	osa-miR5514	Cleavage	4.5	16.904	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0160400.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0160400.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0160400.1	2	d50	Morphological trait	Dwarf	nan	nan
Osa02LNT0160400.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0160400.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus