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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0160900.1

GTCCTGAATGCGCGGAGGTGCATTTTGTCATATGACGGATGTGTTTTCTCCTCAAATTACCTGCATACACATATTTCACCAACACTAGTGGAAATGATTAGTAATAATACCTACCACTAAGTTGGATACCATGTTTTATTTCATTATATGTAGGTATTGACGGTTAGATATTATGATTTAAGGACCGTCAACAACACCCCCACACTTAACCTTTGCTCGTCTAGAGTGAAGGCTATGGACTCTACAATAGAGTTATGACTTCCTTACTAACAATCATGCAAACAAATTATTCAAAGTCATACCTGTACTTGAGGATCTTTGTAGTGTCTACTATGCAATCTTGAACAATTGAGAAATGGAACAATCTTGACTTAAGTCACCCTAACTTTTCATGAAGAACAACTTGGGGTTTTTTCTCAAGTAACACAAAATTATAACTTCGGTTTGCTCCTCAATTTATTCTCTTGATCACTCAAGGTGTATGATTCCCCACAAAGGCATATGATTGTGCCTTTTCTTTTCCTACCATCTAATAAGGCTTATGTGGAGCTCAGAGTATGGAAAAGAGAAGAGCATTACTTGCATCACATATATTGCAAAGTCAAATAAAGGATCCATGGAAATACTAGTCATACTTTCTAGTCAAGAATGTGCATGTATATGTGTGTGGTAAATTTGTGAGTGGAAAAAGGAAAATAAAAATAACTCCTTTTTGTATACCTCCTCCTCCATTTATTCTCTTTTGAAATTTGGGAGAATGCATGGCTATCTCTTTTTTTTCTTTTCTTTCTTTCTTTTTTTTTTCATCATCATGCTCCATACTTGTATGAGCATTTTTTTCTTTCTTTTTCATAGCCATGCCTCTCTCTCTATCTCTCTTTTTGAAAGAACTTTGGAGGAAGATGCATAAATGACATGGAGTATTTATTTTGTGGACTATGGATGAAATGAATGACAAATGAGCAATGCTAACTTCCAGTGTAGAAGTCAAGCATTGGTGGGTGTATTTGGAGTGTATGTGATCTTGACCATGAAAGTATGAAAAGCATTTCACTAGGGTCACAAAACTTGACAACGCTCAATGTAATGACAAGCAGCGTATGTAGCAAGCTAATCATGAATGATCAACCTATGGCTCTAGTGGGAATAAAAATATCAATGAGGAGTTTAGCATCATTATATGTTTTTTTTTCTTTTTATAAAATTCCCAAGTGTGCCACATGAAGAGCAGGATTTCTATCATCAGACTATATTTCATTCATTAATTACCTAGATAACATGGGGTCCCTATTGGATATGTCACCACAAGCAACAAGTAATGAGCAAAGAATAATAGGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.134646
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0160900.1 2 13892619 A G
Osa02LNT0160900.1 2 13892934 T C
Osa02LNT0160900.1 2 13892051 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0160900.1 osa-miR5537 Cleavage 4.5 15.343 1 22
Osa02LNT0160900.1 osa-miR5539a Cleavage 5.0 17.06 1 22
Osa02LNT0160900.1 osa-miR5539a Cleavage 5.0 13.275 1 22
Osa02LNT0160900.1 osa-miR5512b Cleavage 5.0 9.397 1 21
Osa02LNT0160900.1 osa-miR5539b Cleavage 5.0 17.06 1 22
Osa02LNT0160900.1 osa-miR5539b Cleavage 5.0 13.275 1 22
Osa02LNT0160900.1 osa-miR2097-3p Cleavage 4.0 13.407 1 22
Osa02LNT0160900.1 osa-miR2100-5p Cleavage 4.0 16.422 1 22
Osa02LNT0160900.1 osa-miR5512a Cleavage 5.0 9.397 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0160900.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0160900.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0160900.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0160900.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0160900.1 2 d50 Morphological trait Dwarf nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus