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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0161000.2

TTGGCAGATTGCTAATTTTATTGATGCTAACGCGATTTGAAACAATTGCGAACGATCCAAATTCCAAAACAATGGCACAAAGCATTACTGGCTAATGGCTATAGCAGTATATACAGATACATTATACCCTGACATATCCAGGACCAACCATTCACCGTACTGATCAAAATCTGATGCACAGAATCATCAGAACCAATGGCCCACAAAACAATTAATTATCCTCCACAAGACTAAGGGTAAAAGGGATGGAAGGACTCCTGTCCTGTGATGAGATTATATTCTGCAGTTTATTTTCCAAGCAGACGGCGTGCCCGAGTGTTTGCTCCCTTGATCCTGAAGTTCAGTTCGTCGTAGTCCTTCTCTGAATCTCCCAAAGCCTTTGTTTGTCTGTCAATCTCAGTGCCCATGTCAACCGCCATGCCTTTCAGCTCGGTCAATATGTTACTTAGATCAGATAGGCCATCATCCTGCTTTGCCTTCTCCATCTCCACTTTCTGGAGGGCTGAAGTTGGCTCGGAATGGAATTGGCGTGCATTCGATTGAGGTGGGTGATCCGATAGTCCCAGTTTGTGCCTTTGTTCCAAATGGCTGCCCTTCCGAATGAAGGAATCATCTCTAGTTAGCATAGGCCCCCTGATTTCTCCATTCTTTTTTGGCTTCCACTTTTTGGAAAATATACCCCCAAGATCACCCAGCAGCTTCTCGCTCCTGGAGAGATCCTGGTCGATGTCGAGGGTCATCATGTGCGTGCGCGTGATCTGCTGGCCCTGCTGGTGTATGGTGACGAGGCTCTTGGACGCGGTATCCCTCATCTCCTCGGCGATGCGGACGCAGCCCTGCACCCGCTGAGTGGTCTCCTCCGCCTTGTACGCCGCGTAGCCCTCCAGCTCCTGCACCGACTGGGCCTCCACGCCGCCGGTGTCGCGGAAGTCGTTCCTGTACCGGCTCCTCGCCGCCGCCGACGAGGCGGAGAAGCCATCCCCGCCGCCGAAGAGGGAGCCCCGCTGGTCGGCCGGAGGAGGCACGGAGGAGGCCCTCGCCGGTCTCTGCTCCCTCCCGCCATCGTCGGAGTCGGAGTCGAAGGGGTTGCTGCTCCGCGACGGCTTCTTGGATGCGAAGAACGATCTCCTCCCGCTCATCTCGAAAACTCCTTGGGTCAGATTCCGCAGCAAGCAAGTTTCTGCGCACAAATGAAACTTAACTATCAAGAAGGTCCAGAAATAACTGCGCGTACCTCTGCGGACAGATCGGAAGAATTAGTAGTAGGCAAGAAGAACAAGGAAGAGCAGCACATAGCAAGAGGATATATAACAGTAGAAAGCAAGGGCGGATGGTAAAAGCGAGGACTTGGTCGCGCGAAGGCAGAACCGCAATCGCGTGCGTTGCCTCTGGACCGCTGACCCTGTCCTCCTGCTCCTCCTACTCCCTTCCTGGCTTCTTCGGCGGTAGAGTGCGGGGCGGGGAGCCAGGGACACGCGCTTCTAGTTGGAAACAGGAAAAACCGTCGAGATTAAGAAAGAATATAAATTGGCGACAGCGATGGGGATGGTGGCTTTACGCGCAGGGACTGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.546137
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0161000.2 osa-miR395w Cleavage 4.5 11.658 1 22
Osa02LNT0161000.2 osa-miR1870-5p Translation 5.0 15.995 1 24
Osa02LNT0161000.2 osa-miR2907a Cleavage 5.0 16.025 1 22
Osa02LNT0161000.2 osa-miR2907b Cleavage 5.0 16.025 1 22
Osa02LNT0161000.2 osa-miR2907c Cleavage 5.0 16.025 1 22
Osa02LNT0161000.2 osa-miR2907d Cleavage 5.0 16.025 1 22
Osa02LNT0161000.2 osa-miR5074 Cleavage 5.0 18.935 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0161000.2 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0161000.2 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0161000.2 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0161000.2 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0161000.2 2 d50 Morphological trait Dwarf nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus