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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0161100.1

ACGAGCCATGTTGCGAGCAATATTTAATAGATCACGGTTCCCATATAAGTCACCTGTTCTCTTATCAACACCAGCCTGTTTGAGGAGGAATTGAACCAGCCCTGACTTGTATTTAGCAGAACGAGAAGCCAATTTATTGAAAAGCTGCATCAACTGAACCGGACTCTCCTTTTCATACCTCAAAGCATAGAGCAATACTAACCGTAAACGATCAATATCAGACACACTTTCATTGTTTAGCAAGGAAGTGACAGCCTCGAAAGCAGCTGCTTGTCCACTTGTACATGCTAACTCTTGCTCCGTCTGGGAAATTAGCATAATCTTCCTTTCCTCCACAATTCTGCTCATCTCACTGACCAAAGCAACATGCTTCGTTACATTTCCATGAGTCTTCCGATATTCAGGGTAGTTGCTCAGAAATTTTGACATATCACTTATGCTCTGAATATTCTGGCTGGTCTTCGAAAGATGTTGAAAGTCATCTACCATTCTTTTGATATTCATACCAAGATCACCAAAATTCTCGAACATGTTAGCCCTAAAAAATTCATCCTGAACTGATGATAGAACCACCTCCTTCTGGTCTTTAGGGACATTAGGATATTCCCTTAGATCAACTTTATTGTTCTCAATTCCAATAAGTTCATGAACCATTGCCTGATATGTCCATTGGTTAAGTAACGGGGTAACAGGATCATCCCTTCTGTCAATCACCAGCAACAAGGAAGAGTTCTCAGTTCGTCTAAAATCAAACAAGCCACTTTCCTGCTCATACATCAATCTCGCAGTTTCTTGTGCAATCCTTTTTGCAACATCAGATGTCCTTTGGTATCTAATAACAGGACGGCGCTTGAGAGCCAGGAAGACAGAAGCAATGCCATCAACAGCCCGATCACAGAAACTCTGCATACCAGGAGGATCCACCACCATTGGAAGCATGTAGACGTGGTTATTGCGTATGTTCAGCGTGAAATGGTAAGGGTCGATGGCACAAAAATCAGCATAGAACTCCTGAACTTGCTGCACAACCTCCTGCTCATCGGAATCTGCGAGCACCTGAATCTGTGGAATAGAGGTGGTACTCGGCGAAACGCGGGGCGGCGAGATGCCGGCGGAGCTTCTGGACGTTATCGGAGGAGGGGCGGAGGAAGTAGACGGCCTTGAGGTGCGCCATGGACTCCCTGGAGCTGGAGGCGTTGTCGACCGTCTCCACGAGGAACACCTCCTTCCGGAGGAGATCTGACTGGCTGTACACCACGCTTACCATCCCCACGGTATCGGGGTCGAGGACGAGGACCTTCATCCCGGGGATGTCGTGGAGCATGCGATCGATGTAGTCGCGGATGAGGGTGATCAGCGTCATCGCTGCGGTGCGGTGCGGCGCCTTGTGTTCTTCCGTCGGTTGGATGCGCTGAGGCTGGGGATCGCCGGCGGCGAGGTCTAGCCGGAGCCGGAACAGGTGGGAGGTGGCTGTTGAGATTGGAGGCGCTCAGTCGGAGACTCAGGACGAGAGACAACCAGAGCAGCAGCGATACCAGGCGAGGGAGAAAATTGCAT

Coding Potentia
Explanation CPC Score
noncoding -1.18858
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0161100.1 2 13979939 A G
Osa02LNT0161100.1 2 13981046 A G
Osa02LNT0161100.1 2 13982132 A G
Osa02LNT0161100.1 2 13982816 A G
Osa02LNT0161100.1 2 13983707 A G
Osa02LNT0161100.1 2 13981822 T C
Osa02LNT0161100.1 2 13986744 G A
Osa02LNT0161100.1 2 13981620 G A
Osa02LNT0161100.1 2 13986532 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa02LNT0161100.1 DTM_#DNAt_MULE_japo_Os0115 Chr2 - 13985887 13986740 853
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0161100.1 osa-miR5821 Cleavage 4.5 12.71 1 21
Osa02LNT0161100.1 osa-miR171a Translation 5.0 20.385 1 21
Osa02LNT0161100.1 osa-miR399e Translation 5.0 18.428 1 21
Osa02LNT0161100.1 osa-miR399f Translation 5.0 18.428 1 21
Osa02LNT0161100.1 osa-miR399g Translation 5.0 18.428 1 21
Osa02LNT0161100.1 osa-miR399k Translation 5.0 18.428 1 21
Osa02LNT0161100.1 osa-miR2095-5p Cleavage 5.0 19.12 1 22
Osa02LNT0161100.1 osa-miR5144-5p Cleavage 4.0 14.32 1 21
Osa02LNT0161100.1 osa-miR5511 Translation 3.5 23.975 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0161100.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0161100.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0161100.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0161100.1 2 d50 Morphological trait Dwarf nan nan
Osa02LNT0161100.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus