\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0161300.1

CGCGTTGGAGGTCCCTCTAGACCCATCTTGCGCCGCCTTTGGCCGCGCCGCCCTGCGTAAAGCTGCAACTGAAACAGGCTGCAACAGTTTGACAAAGTGACAAGACCTCAAAGTCAACCACTTACTTCTCGCCAAGCGTCACTAGCCACTGCCGTCGTGGAGGTGTGGGAGATGCATCCGAGGCCGAGGGGGTGGACGTCTTCCGACGATGTCTGACCACAGAGGAGAATGTCCTCCCCTTTTTCGGAACGTTGCCGCCGCTCGTTATGGCAGCGGCAGCAGCAGCGTCAGACGCCTCCTTGGCGACTTTCTCCTTCAGCGACGCCGCCACCAGATGGTCCACAAGTGGCTCGATGATATCAGTCAGAGGGAGAGCATTGATGGCAACGTCGTGCTCGGCTGCCCCTTTCTCGCAAAGGGGGACGGGGACGTTGCTCGCCGTTGTCGGGCCACTGATCATAAGTTGGCTGACGCGGCGCTCCTAGCCTATCAAGGGGCCTGAACTAGTATAATCTTTGTTTTCTGCCTGCTTGATGTCATATTACGTAGATCCTCGTACTAGCGTACCCCAATACCCTCTTTATCCAGTCTACGGGTATCCCCCGTCGACACAAATCTCACTCTCCATTTGTCTATTTGGCCAACTCTCCATCTAATTTATCAAGTCTAACTTGATGTTTGCTCCAACAGCCTCTCCATTCACCCTCTCTACTCTGAATCTATGACAGTGGGACCCACATGTCAGCCTCTACAATCCTTTCTTCTTCCCCATATTCCTTCCTTTTCCCCATGCTTCATACTCTCATGAAGATCAACAGATGGTGATGGTGGACAACAGATTGCGATGGCGATGATGATGGAGATCACCGGCCTCCTCCTCCTCAACCGGCGTGCGTCGTCGAGCCTCTCTTGCTGTCGCGCCCTCCTCGGTGCCCATGAAGTAGCGGGATTGAGAGGAGGCGCACAGCGGTGGCCCTCTTCACTGCTGGTCTCCCATCTTGTCGCCGGCGATGAAGCCGAGGCACTCCTTGCCGGCTGCGACGGCGAGCCTCCTTCCCGTGGCGGCGGTAGGCATGGGAGGAGGAAGGAGGGGCGTGGCAGCAATAGGCGGAGGAAGGGAGGGCACGGGCAGGGATGTGCGGA

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.29818
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0161300.1 2 14392416 C T
Osa02LNT0161300.1 2 14391907 A G
Osa02LNT0161300.1 2 14391961 T C
Osa02LNT0161300.1 2 14392189 C T
Osa02LNT0161300.1 2 14392322 C T
Osa02LNT0161300.1 2 14392466 T C
Osa02LNT0161300.1 2 14393092 A G
Osa02LNT0161300.1 2 14393297 A G
Osa02LNT0161300.1 2 14394177 C T
Osa02LNT0161300.1 2 14394217 T A
Osa02LNT0161300.1 2 14394626 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0161300.1 osa-miR5809 Cleavage 3.5 23.006 1 20
Osa02LNT0161300.1 osa-miR414 Cleavage 4.0 19.802 1 21
Osa02LNT0161300.1 osa-miR1852 Cleavage 4.5 12.319 1 21
Osa02LNT0161300.1 osa-miR1846e Cleavage 4.5 23.671 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0161300.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0161300.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0161300.1 2 d50 Morphological trait Dwarf nan nan
Osa02LNT0161300.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0161300.1 2 qSS-2 Physiological trait Sterility RM301 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus