>Osa02LNT0161400.1

ACAAATTGCACACAGGCATCTTGATATTTAGAGGTCTCTAATAGCAGTAAGTACATATATAGATGGTTCTTCATATTAGGAGGTTCCATGATTACCATGTAAGGCCTAGAACTAATACATGTTATCTTGACAGTGATCAACCTGGTTGATGGCAGCAAAAGGATGGCTGCAACATAGCCATGAGTATTGCTATGTTCTTTATAGAACATCGAAGGTGGCTTCCAGGCGAGTTGTTTTGTAGAAATGGAAGGTGCATAGTGATTGTAGGTATATGTGATTGTGGGTTGCAAATTTTGCCCATCCTTTCTTCAGGTTGCATCGACCATCCGTTGACATATGGAGGATCATATTCTTTGAAACACCACCTGCAATTTGAACTCCAATGCTGATGGTTTCCTTGCCTTCCATTAATGGCTTTAAGTAGTCTTGAGAAAATTCTTTAGTACAGTAAACTCTATCCTGCTTCATGAATGTGTTATTCACAGCAACAGCATAGAATTTGCTTGAACGGTCTAGGCACTCAAGATCTTCGATATACTTTTTCAAGTCAGCTGTTGGATCAACATTCTTTGCACAGAAACACAGCTCGTTAAACGCACGCTTAGTGCTGCCTGTCATGGTGGTGTTGGAAGGGGTATCAGATGATAGATCAGTTTTAGTGTTGGAAGAAGTGTCTGATGTATCTTCAGTGGAAGTGGCAGAAATAGTAATTGCTCTGGTGTGAGGCTGATAGCTGATATTGATACCTTGGATGATTGATGCACATGTCTGTTTGATTTGATTTGAAACTATACAGGAAACAAAGGAAAGGATGTCTCGGTTAATTCTAAAAATGTCTGGCGCAACAATAAAAGCCAGAGGCACTGCACAATAAAAAACATCGGGCACCATAAAATAAAATCCAAAAGCAGATGGGACGACATAGACAATTTCTACTTTCTTTCTTTTTACCTTGAACAACACTCTGCATGCGGAATAAAAAGGCACAGCCAATCAACATATATATATAGATTAACAAAATCTGTCTATAATCATCCACAAAGGAAATGCATAACAAGTGAACCATAGACACTGATAACCTTCCTCTACCAACAATTGAGGCCTTATCTATATAAAACCTTAACCGGCAGTGGAACCAACCCATCCAATTAAACACGCATATAAACATCCACTCCTTACACATCAACGCAGATATTAAAATTTTATCTCCTGTTTGCTTCCATGCAATTAGTAGATGGCAAGCTGCAGCAAAGGTAAATATAATAGAAAATTACACAGGGGACCACAAGCCAACGGAATGCACCATGCCAGCAGAAATGAAATAGAAAATCACATAGGGTACCACAAGGCAATGGAATGCACCATGCTAGCAGAAACACAGGGACATAAACCAACATGCAAACACCAGTAAGAACGAGCAAAAGCGGCATCGAATGCTGCATGAGCACCTGGAAACAAAATAGATGAAACTGGAACACTCTATGTTTCTGCAGGCACTCTACCAATAGCATATATAACTGAACATCTACCAGAAATAAAGGAATCCTATCACACCGACCTTTAAATAACAAAATGTAGTGACCAGCACCTAAGGAACATGTTGACACTCTACGTTCAAGCTAACAATTTTTTTTATCACGGATCATTTTTTCCCATAGCGATAAATACACAGAGAACTATAAAAGAGAACATGGGCAGTGCCTTTTTAAGAACAACTCTATCTTTTTTTGATAAAGGAAAGAACGCATAAGCCTCTGCACCTATAATATCAAGAAGGATTCTCCATCACGCCGCAACCTCATTGCAGCCATAGAAGTAAAAGGATGTCTGAACCAATTCTAAAACTGTTTGGCACGAAAATAAAAGCCAAAGGTATTGCACAACAAAAAAACACTGAGCATGATAAAATAGGATCCAAATATAGATAGGACGACACAGAGAATCTCCATGCTCTTTCTTTCACCTTGAACAATCCTCTGCATGCGGAGTAAATAGGAACAGCCAACCAACACATATATAAACTAACAAAACATGTCTATAATTATCTAGAAAGGAAATCTATAGCGAGCGAGGCAAGAGCATTGACAATCTCCCTCTACCAAAAATTGAGGCTCTATGTATACGGAATATTAATTGACAGAGAAATCAAACCCATCCAATTAAGCAGAAACATAAATATTCCCCCATCACCCATCAATCCAGATATTCAGGTTTCATTTCTTATGTGCTTTCTTACAACCAGTAAACAACAAGCCGTGGTAAACCTAAATATAGTAGAAAACTACACAGAACACCACAATCCAACGAAGTGCACCATGGCAATACAAACAAAATAGAAAGGAAACCGGATTGCCCCATGCCTGTGCGAACATCTGCCTATCCCCTCGAATAAAAGAAAATATTTAGAGCAGAACAATGTATGAACCGGTAGGAATGGAAAGTAAACCTGATCATTTCAATAAGCAGTTAAGTACACACCATGCCTATCAATGACTGCCCACAAGAGCTATTAAGACTATCACTGAAGAAAGAATCGGAGGTAGAACTGGGGGTGTCGGCACTGATCCCCACCTTCCCATACATGATGCTGAACATAGCTGGAATCAGACGTGCCCGGTCGCTGTTGCTGCTGTTGCTTGCATCCCACAAATCCCTGAAAAGGCCGTCCAGCTCCCTCGGCAACGCGACCATGTGTACTGTTCTAGCACCGCCAGCCCAGAGATACCAGTGACTCCTCCATGGCCGAGCTCAAACAAGGAGGGAATGCACAGCATTCATCAGCACAAACGGTGGAAGAACAGGAAGAAACTGCCGTTTACCTCTGGCACACAGACAGGGAAGGATATGCGAGCGTCGGCAGCAGCAAGGTTGGCGAACGGTGGCTCCCATCCAAGGAAGAAGCAATCGTCGCCGCGGCCACTACAGCGATCGCTACCGGCATCCCAGCTAGGTAGCACCACACTTCACTTATCTGACATTCTGAACTGATAATCGTGGAGCACAACAAATCAAATCAAGGCAAGCCGCACTGCCACTGCCACATTCTGGAATCGCATCCATCCAGACACGATACTTCATGGAGTCACAGGCTGCTGTTGGTGTGAGGACCACCCGCAGCCATGGTCAGCAATGCACACGCCCTCGAAACCCTCATAGAGTCCAACCCAACCCTGCATAATTGAAGGCAGCACAACAACCCACCAATGTCCATCTTGGTGAAGAAGATGAAGTTGATGGCGTCCGCCTGTGCCAGCAACCGCATCAACGTGTAG

Explanation	CPC Score
noncoding	-1.15293

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0161400.1	2	14358422	T	C
Osa02LNT0161400.1	2	14359866	G	A
Osa02LNT0161400.1	2	14359962	G	C
Osa02LNT0161400.1	2	14361025	C	G
Osa02LNT0161400.1	2	14359926	C	T
Osa02LNT0161400.1	2	14358126	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0161400.1	osa-miR1319b	Cleavage	4.5	14.423	1	24
Osa02LNT0161400.1	osa-miR5512b	Cleavage	4.5	19.802	1	21
Osa02LNT0161400.1	osa-miR171f-5p	Cleavage	3.5	14.683	1	21
Osa02LNT0161400.1	osa-miR171f-5p	Cleavage	4.0	16.767	1	21
Osa02LNT0161400.1	osa-miR413	Translation	4.5	24.237	1	21
Osa02LNT0161400.1	osa-miR530-3p	Cleavage	3.0	12.593	1	21
Osa02LNT0161400.1	osa-miR529b	Cleavage	4.0	7.675	1	21
Osa02LNT0161400.1	osa-miR2866	Cleavage	4.5	14.653	1	20
Osa02LNT0161400.1	osa-miR5486	Cleavage	5.0	17.017	1	21
Osa02LNT0161400.1	osa-miR5492	Translation	4.0	10.606	1	21
Osa02LNT0161400.1	osa-miR5512a	Cleavage	4.5	19.802	1	21
Osa02LNT0161400.1	osa-miR5524	Cleavage	5.0	13.59	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0161400.1	2	d50	Morphological trait	Dwarf	nan	nan
Osa02LNT0161400.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0161400.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0161400.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0161400.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus