>Osa02LNT0161600.1

ATTTTTAAAGTCTATGGTACTATAATGCAAAAGTTACAAATATCATACTTTTCACTAGATTTTTATTTAATTGCAAATCTGTGAAAAATTATGCTGAGCCTCCACCGAATAAACCATGCTTAGGTGTCAAACAGGGAGACCACTAGTAAAACCTTAGTAGGTGAGTCACCTAGTAGTCAACCATGTCCATGTGACAAAAACCATATCAGTGTGAACCCCATCCTGACCGAGCCTCGTTTTCCTCGTAGAGACCAAAACCAGTTAGCAAGAAGAACCACCATAACCAGAGAGTGGAGAAGAAAAGAAAAATACAAGAGGGCAAACTCACCCAACATTAGGTGGAGCAGGGGCTCCAGCTCCATTAGGAGCAGGTACCCCAGCTCAAGGAGGAGACGCTGATTCAGTAGAATCAACCAACCAATAGAAGTGGTGAGGGTTGTGGCCGGCAGAGTTGCCATTTGAGGCATTGGCCGTCTCCACGGCGACCATCACAGGAGTTGAGTACCAATAGCCATGGAGGACAACAATGCTCAGATTCCTTGAGAGAGGAGAGGTGGTAGTAGAGGATGGAGGTAAAGCAGGATATGAGTTTGTGGGAACTAGGGGGATCAAATCACTGCAGGGGCAGCTGCTAGGGAGATCGCCGGAGTGGGGCGTGGCAGCCGGCCTGAGGGAGAGCGTCGGTGTTGGCGGCGCTGTTTGGGGATGGCGGCACAGGAGAGAAGGCGTGAAGGAGAGAAGGAGATAGCGAGAGAAGAAGATGAGAAGAAAGAAAGTGGGCTGGTTGGGCTTTGGTTTTGTGGGCTAGACTAAATTAATTATATATAGTCTCTAGGAAATTAGTTTTAGATTTAGAATAGAATGTGAGCAAGTTTATATAGCATACAAATTGATGATTCTAAATTTTTGACATTAGTGCTAAAATAAAATCTGAGCAGAGCAAAATAAATTTATATAACAGTACC

Explanation	CPC Score
noncoding	-1.05448

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0161600.1	osa-miR5516b	Cleavage	5.0	22.742	1	21
Osa02LNT0161600.1	osa-miR2931	Cleavage	4.5	12.921	1	20
Osa02LNT0161600.1	osa-miR5516a	Cleavage	5.0	22.742	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0161600.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0161600.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0161600.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0161600.1	2	d50	Morphological trait	Dwarf	nan	nan
Osa02LNT0161600.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus