>Osa02LNT0161700.1

GCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTTCCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATTTGAGTGGAATTGAGATCAGAGGTTGGAGTTCCTAACACACCGCCAATGTTCGGCCCTGCGACATGAAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTATAGGCTACACAGATCTACAGCCATGCCATGCTGAGTCAGGTCCGATCTACAGCCATGCCATGCGGAATCAGGGTGCCGTTGCTCTCCTGGTTTGGAGATGTACAGGGAAAATGGAAATGGTACAGGTATTTCATATTGTCCTACGAGGTAATATTTCTTCACTCGGTAATCTGTTCAGTCAATGAAAAGTTGTGCAATCTCCTGACTCTTTCAGGACATCGACATAACTACTACATGGACAGGGAAGAGTTATGAGGTATTAAAGGCCTGAGATTCATGGAAAAACATATCCTCGGGCAACATGTTCATTAATGTACCAATGTGCTTGATAGAATCCCACTGCAAGGAAATTTGTATTGTTCTGATCAAGGCACAAGTACAGGAGAAAATTGACGTATTTTTGGATATGCAAGCACTGGGCATTCAAATAAGATCTTTTTGTCATGCTTTCTATTTTCTATTTAACTACTGGAGTATAACGTCTATTTTCCCCTGAGCCAAAATACAGATGAATTGTTCTGCAGAGTGTAAAATTGGGCACAAAAATGCTGAGTAATTGCACCATAAATCAATAAATCACTACGTACTTATACAGATTGGAGCTGTTTATTTTCCTTCCACTCAGGCTTCTTGCTGTTGGTGCAAATGGACTTGCAATCAAATCAAATGCCCTGTCATGAGAAGGAAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTGCTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGCCGGATGTCAGCGAGAGCATGCACTGCCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGAATGAGCAGTAATGAGGCTTGAAGGTGATACAGTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATTTGATTCGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAACTGACGCCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACGAAAGAATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGATTCTTACTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATTCTGATTTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGATAGCTTTAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTAGAATATCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTCTTTATACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATGGTGGAAGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGACATGAGGGTGCTCATACAAAGTGATTTCTGAGAGCTCAGATTAATTTTCTATCTATAAATAACCATCTCCATAAATGGGGTATATATATGTTTTTTTAATAGAAGTTTTGCATACATTTTTTTGTGCAGTTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACT

Explanation	CPC Score
noncoding	-1.18016

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0161700.1	2	14972049	A	G
Osa02LNT0161700.1	2	14971176	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0161700.1	osa-miR5527	Cleavage	4.5	22.508	1	21
Osa02LNT0161700.1	osa-miR5799	Cleavage	5.0	17.349	1	24
Osa02LNT0161700.1	osa-miR1319b	Translation	3.5	21.435	1	24
Osa02LNT0161700.1	osa-miR393a	Translation	4.5	17.966	1	21
Osa02LNT0161700.1	osa-miR408-5p	Cleavage	4.5	24.787	1	21
Osa02LNT0161700.1	osa-miR530-5p	Cleavage	5.0	22.986	1	20
Osa02LNT0161700.1	osa-miR816	Cleavage	4.5	14.589	1	20
Osa02LNT0161700.1	osa-miR444a-5p	Cleavage	5.0	17.917	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0161700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0161700.1	2	d50	Morphological trait	Dwarf	nan	nan
Osa02LNT0161700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0161700.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0161700.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus