>Osa02LNT0162200.1

GCTAGGACAATTAGTTTGGTGCTACAACAAAAACTGCTCCAGTAGCGCAAGCTCGGGAGAACGAGTAAATATAACTTGTTATATAACATACAAAAACTGTATAAGTAATTAAAGAAGCGCATATGAACCAACAATTTAAAGTCTCAAGGCAGCAATTGCTTCAGGCCTGAAGTCAATCCGAAGCCCTAACACCCTCCTAACCTCTGCTGGTGTCAAAAGCCATGTCAGATGCCCGGCATTGTCACCCCAGAAATCCAGTATCTCCGATACCCGCTCAAAATTCAGAATTGTTGACATCTGGGAAAGTCTTGAGAACTTGTCTCGGACTGGTCTCTGTGACATTTCCGAGAAATGGTTGATCAGGGAGCGTACCTCCTTGTCGAGCTGGAGCCCACCAAGCTGGCTGAACCTCTTCTGCATCATTATCACTTCAAGCCTCTTGACAATGAAGTCGATGATTAAGTGCACAAAGGAATCATAGTTGTTTGATGTCATCACGGGCTGGAGCCATGCAACATTAGTATTAACTGTAAGGAGAAGCTTCTGCACCCATGGATCATTCACCTCATTTTCTCCATATTCGGCATCATCCAGCTCATAACTGACAGTGGCAACAGTGTCCAGAACAGGACGAACACGGGGTGCCACAGATGCCACTAAATGCTCCAGTCCAGAATGAAGGATCTTCTTGAAGGAAGCACTGATCTCACCTAGCTCAGATAAACAGGATTTGATTTTCTCTCGGTCAGCAGGAGCATGAAAAGCCTCTGAACAGAGCTCCTCAATCTCATGACGGAGCTTCAGGACATACTCTGAGCTAACATCCATGTTGTTCAGCGCAGTTGCAATCTCCTCACCAGTCTTCTGAACACCAACACCACCAAGAAAGAGCTTTGCACCCAAGTTTGGTTCCCTCATCCTCCATTGCAGTGCTTCCTGGTACTCATTGCTCAGTAGGCTCGCCGCCCCACCAAGCACTGCAAAAATTGAGTTTATACTTGCAGTGGATGCTGCTCTTCGGCAGCAACTCTGCAGTACGAAGAACACATCATCCACCATTGATGTTGTGAGACCATCAGGCACTGGTTCATCAATCCGGATGGCTTTCCTTACATTCTCAACCATGAAGAATTCTTCCAGGATCACATAAAACCCAGTTAAATCCTGCACCATTTTATTGAAGCTACCATTCCGGAAGGACTTCATCGCTTGTGGTCCCAGCTCAGGTTTGACATCTCGCAATCCACGAATCTTATTCACCATAAATTCAGTATAGTCTTCACCAAGCTGTGTCAGTGACAGAATCTCCTCAAGATAGAGCTCGACCTCCCTGGGGTCAGGCCCTTCATTGCCCCCTGCAGCATTGGCCACAGAACTCACCACAGAGAGGAGGTTCTTGGTATATGAGTTTATATCCGAGGCAAGACGTGCAAGTTTCCTGTAATCAGCATATCGGCGCAGTATCTGTGTGCCCCGGGAATCACACTCCTCCTGCAGCTCAATGATGGCATAGGCAACACCATCCTCACCTCTGAGTTCACGAAGCACAGCATCATTCTCCTCAACGGCCAGGACAATGTCCTTGAAGAGACGGGTAAGGCAGCCAACAAAATCAGGCCGCTCTGAAGTAGGCTGTGTTGCAGAGGTTAACTCAGCTAGGTGCTCGAAGTCGGCACGAGCGCGCAGGGCGACGACCTTCTTGAGGTAGGCGACATAGACCTGCAATCCCTCATCAGCGAGAGCGAGGAGAGGGAAGAGGCGGACGAGGCGGAGAACGGCGGGATGGTTCAGCGCGTCCACAGCATCCGCCAGCCTTCGGCGCGCGAGCCCCTCCAGCCTGCGCTTGATGTCCAGAAGGTCGCGGCGGAGGTCGTCATCGGTGGGGAACCGGGCGTCGATGGCGAGGAAGTCGTGCGCGGCGGTGGCAGCGGCCGTGAGATCATCCGCCGCCAGAGCACGGCGTGCGGCGTCGAGCGCGCGGGACCTATCGAGCGCCGCCTCGGCGCGCGCGAGGGCGGCCTCCGCCCTGGAGTGCGCGGCGTCGAGGTGGCGCACGCGGGAGGAGAGCGCCTCGGCCAGCGCGGCGGTGGAGGAGGAGGAGTCCCTGAGCGCGGCGGCGTCGGAGGCGGCGAGCGAGAGGAGCGGCGGGGCGGAGCGGAGAAGGGAGGCGGCGGCGCGGTCGAGGTCGGGGCGGCGGGCGAGGAGCGCGTCGAGGCGGGCGTCGAGGGCGCGCTGGTAGGCGACGCACTCGTGGAGGAGGCGGGTGGCGGCGCCGGCGTCGGTGAGGGCGCGGAGGGCGACGACGGAGGCCGGGTCGCCGAAGTCGAGGGACGGGGCGGTGTCGGTGGAGGCGTCGGGGGGCAGCGCGGCATCGGGGCGTGGGGAGCGCGGGATGGGCAAGGGGTAGGACGCCACAGCCATGCCGGCCAGCCGCGGCGCCGGGGATCGCCGAGATCTCGGTGGGTAATTCGCGGGATC

Explanation	CPC Score
noncoding (weak)	-0.196884

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0162200.1	2	15141382	T	C
Osa02LNT0162200.1	2	15142254	T	C
Osa02LNT0162200.1	2	15143384	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0162200.1	osa-miR166j-5p	Translation	4.0	14.119	1	21
Osa02LNT0162200.1	osa-miR426	Cleavage	5.0	18.183	1	21
Osa02LNT0162200.1	osa-miR440	Cleavage	5.0	20.468	1	24
Osa02LNT0162200.1	osa-miR444a-3p.2	Cleavage	4.5	14.075	1	21
Osa02LNT0162200.1	osa-miR444d.2	Cleavage	4.5	14.075	1	21
Osa02LNT0162200.1	osa-miR444e	Cleavage	4.5	14.075	1	21
Osa02LNT0162200.1	osa-miR1851	Cleavage	4.0	12.819	1	21
Osa02LNT0162200.1	osa-miR2105	Cleavage	5.0	17.0	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0162200.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0162200.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0162200.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0162200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0162200.1	2	d50	Morphological trait	Dwarf	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus