\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0162500.1

CCAAAAGAACAAATATGCCATGGATGTAGACTCATAGGTCCTCTTTGGGACCAATTATAGCAACGGACAGCTTATGATTACTCTAATATCTGATTATCCCCAAACAACAAAATTATTCATAAATATCTGGCCAACCAAACAAGTCATCACTTTTTTTTTTTTTGGGGGGGGGGGGGTCTAGTCATTATGCACTCATGCCGTATATTCAAATATAGCAGGTACATATTTGGACAACTGCATATAATCCATAATCAAGATAATCAAAAGCTTTCATAAAGGTGGCCATATGCATAGCATTATCAATAGTTATGACATGCCGGATTTGTGCAGCCATGCCATCACCTCCACTTGATCCTCACCACGTTGCCAGACCTGCACGCGCCAACAACAGAAGTAAGAATGTCTTCATCGAGAATGTCATCACCTGCTGCTTCAGTTGCTTGAATGTTGCTTCTGAATCTTCATATGCATCCACCAAGATGTTATATGAAGCTCTGTCACAATCACCCCTCACCAAATGCTGCATCAAGGAGAGATCCCTCAAGCGCCTTGCAGCAATCCTGTATGGCTGTGGTGCATTGATATATACAATGTATATTACTCCAAACTTAAAGAAAAGTAAAAAATTCCATCCAGATGTCGGTAGGAACGTAGGCTCGTGTAGCCATGGATTTATGATGACCACCATTTATCTTCCATGAGGACATCATAAGCATACACTTCGGTCTCGTGGCTAGCCTGTTGCATTCTTCAAACACTTCTTCAGTCTTCTCATACTGACTTTCCCTTGCAAAATGCATTCACCAGGGCAGTCTAAGTGCAGCTGGTAGGATTGCACCCTACTCCATCTCATTTAAGATTACTATCAACAACATCGGTTGCTCTGATCTTGTCAGCGATGTTGGTCTAGAGGCCCCAAAATTGCTATCCATTGGAACCCATGAAACAGGTCTTGCCGATCTAGCAATCGCCGAGCAGGCTGACCTTGAGGCTGCGTCCTTGACATCCGGCGCCTTGCGGTCGGCGGCGGCGCCACCGTCGTCCCTGGGGAGCAGGGACAGAACGGCCCCGTTGGCTATGCGCTGCGGTGGCGTCGAGGAAACTGGGGTGGGGGTATGGGGAGTGGGAGCGGCGACGGCGGCGAGGAGGCGGGGAATCGCCGTGATGGGATGGACCACGAAGGAGAGGGAGAAGGCGGCGGCGTCGCGTGGCAGTTGGAGTGTTGGACGGAGGCGGTGGCGTCGAGGAAAGTGGCGCCGTGGGTTGGGGGGTGTGGGGCGACGGACGGAGGAGGCATGGATTCCGCTGCAGGCGGGGCAGGGCGGTCGCCGGTGGCAGGGCGCGATGGCGACGGTCGTCGGCGGCAGGGCGATGCGCGACGGAGTGTGGGCGGAGTGGGCGGCAGACGCGGAGAAAAAGGAGTGGGGGAGGCGCC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.777756
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0162500.1 2 15706744 A T
Osa02LNT0162500.1 2 15708289 T G
Osa02LNT0162500.1 2 15708747 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0162500.1 osa-miR5526 Cleavage 5.0 12.17 1 21
Osa02LNT0162500.1 osa-miR812t Cleavage 5.0 22.968 1 24
Osa02LNT0162500.1 osa-miR812u Cleavage 5.0 22.968 1 24
Osa02LNT0162500.1 osa-miR395b Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395d Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395e Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395g Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395h Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395i Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395j Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395k Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395l Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395s Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395a Cleavage 4.5 18.082 1 21
Osa02LNT0162500.1 osa-miR395m Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395n Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395o Cleavage 4.5 15.611 1 21
Osa02LNT0162500.1 osa-miR395p Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395q Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR395w Cleavage 5.0 15.611 1 22
Osa02LNT0162500.1 osa-miR395r Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR1859 Translation 5.0 18.438 1 22
Osa02LNT0162500.1 osa-miR2097-3p Translation 4.5 14.487 1 22
Osa02LNT0162500.1 osa-miR395y Cleavage 5.0 18.082 1 21
Osa02LNT0162500.1 osa-miR812n-3p Cleavage 5.0 22.968 1 24
Osa02LNT0162500.1 osa-miR2097-3p Cleavage 4.5 21.625 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0162500.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0162500.1 2 d50 Morphological trait Dwarf nan nan
Osa02LNT0162500.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0162500.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0162500.1 2 qSS-2 Physiological trait Sterility RM301 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus