>Osa02LNT0162700.1

CTCCTCGACCCATGGGGTTGTTACATGCATAACAGACTCCGACTTTGCTGGATCTAACGACCGAACGTGCCATCCCACGCTCCAAACCCAGCTCAGCCACTACAACTGAAAGAACTGAAAAAACGCTAACTGACTTGACCGAACTCTGAAAGTTTCAGTCCGGTCATGCAATGCACAAAAAAAACTGTTACATCATGCGAATGACTAATTCAACCTATAAACCAGGTCTGGCATTCAAGATTAATAGCTACTCTATCATTTTCCCCCCTAATCTTGAATCACCTGCTCCAAACCTATCTTCTTTCGAAGTTCCTGAAATCGAACTCGTCCAACAGGTTTTGTCAGAATGTCTGCAAGCTGGTCTTCAGAACGCACATACTCCACGACAATTTGCTTCTTCTCCACACACTCCCTGATGAAATGGAATCGAGTATCAATGTGTTTGCTTCTGTCATGAAGTACTGGATTCTTACACAAACTGATTGCAGACTTGTTGTCAATTTTCATCACTATTTGGTTGGGTTTTTCACCTAGTATTTCAGCCATCAGCCTGCTTAGCCAAATGCCCTGACATGCAGCCGTAGTAGCTGCAATATATTCAGCTTCACACGATGACAAGGCTACCACCATCTGTTTTTGAGATTGCCAGCTGATCAAACTCTCTCCCAACCTGTACAGAACTCCAGTGGTGCTCTTCCTATCATCCATGTCTCCTGCCATATCACTATCACTGAACCCAACCAATTCCAGATTTTCAGACTTATTCCTTCCAAACCAGCAGCCAATTTTGAGAGTCCCAGAAATATACCTCAAAATATGTTTTACTGCGGCCCAATGTTCAGAAGTTGGCTTTTCCATAAATCTACTTACATATCCAACTGAATACGCAAGATCAGGCCTAGTATTCACCAAATATCGGAGACTTCCCACAATGCTTCTATACAAAGCTGAATCTACAGCTTCACCATTACTGTCCTTTCTCAGTTTCAACTTTGCCTCCATTGGAACCTGAGTTGAATTGCAGCCTTCCATTCCTGTCTTCTCCAAGATTTTTGCTGCATAGGCACTTTGTGACAAGAAAACCCCATCACTTCTCTGGACAACCTCCATTCCTAGATAGTAGCTCAGCAACCCCAGGTCACTCATGCAAAATTTATCCTTCATTTCCATCTTGAAAAGTTCAATTTCACCTTCTTAAGCCCCACTAATGATCAAGTCATCAACATACACCCCAACTATCAACCTCGAACTTCCAGTTCCTCTCACATACACAGCACTTTCAGTCTCGGACTTTGTAAATTTCAGAGAGAGTAGTGTGTTATGCAACTTAGCATTCTAGGCCCAAGGAGCCTGCTTCAGGCCATACAACGCTTTCTTCAGTCTTAACACTCTGCCTTCACTTCCTTTTTTACTGAACCCAGGAGGTTGCACAACATAGACTTCTTCCTCTAGGTCACCATTCAAGAAAGCAGACTTTACATCCATATGATGAATCTGCCAACCTTTATTCGCAGCCAAAGCAATCAACAATCTCACAGTCTCCATCCTTGCCACAGGGGCAAAAACTTCCTCAAAGTCAATCCCTTGCTGCTGAACATATCCCTTTGCCACTAATCTGGCCTTGTGTTTCACCACTGCACCTGCTGGATCCTTCTTCACCTTGAACACCCACTTCAAACCAATTGCCTTGTGCCCAGATGGGAGATCTGCAATACACCAGGTTTGGTTTTCTTCGATCGATTTTAACTCTTCTTGCATTGCTTCCCTCCAACACACATGTTGCTCAGCTTCAGCAAGACTCATGGGTTCTTCACTTGCCAACAAGCATTGATCACTATAATCAAAATCCAGAACAGGCTCAGTGGTGGAGAGGATGTCTTGAACACGGCGATACCTAACAGGCCCATCATCAGAATTTGGAGTTACCACACTCGGCGGTGTGCAGAATTCCACCCCTGCAACCCGTCCTCAGAGCCCGCAGCTTTCGCCCGGACTCCAACTCGACGCCGGCTTGGAACTGTTTGATTGCCGCCGCTGCTTCATGCTTGCCGGACAGGAGCCGAATCCACATGTACCGGCTCATGTCGTCCACGAGAAGCAGGAAGTACTTCCTACCACCCGGTGTCGCAGGCGTGATTGGCCCGCACAAGTCGCCATGCACCAGTTCGAGC

Explanation	CPC Score
noncoding	-1.0967

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0162700.1	2	15987643	T	A
Osa02LNT0162700.1	2	15988120	C	T
Osa02LNT0162700.1	2	15988694	T	C
Osa02LNT0162700.1	2	15988870	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0162700.1	osa-miR6248	Cleavage	4.0	9.653	1	21
Osa02LNT0162700.1	osa-miR1853-5p	Cleavage	4.5	20.818	1	24
Osa02LNT0162700.1	osa-miR1860-5p	Cleavage	4.0	19.921	1	21
Osa02LNT0162700.1	osa-miR1876	Cleavage	5.0	13.048	1	24
Osa02LNT0162700.1	osa-miR5157a-3p	Cleavage	5.0	23.132	1	24
Osa02LNT0162700.1	osa-miR5157b-3p	Cleavage	5.0	23.132	1	24
Osa02LNT0162700.1	osa-miR394	Cleavage	5.0	20.629	1	20
Osa02LNT0162700.1	osa-miR2872	Translation	5.0	20.535	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0162700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0162700.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0162700.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0162700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0162700.1	2	d50	Morphological trait	Dwarf	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus