\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0163500.1

GCTACACTGTTTACAATTTTCCTCTCTTGAAAATACACATGTTGAGGGTAGTAGAAAGCCTTGATTTTGTGACTTCACTCAAAAAGAACATTTGATACAACATACATTTCCTAAATTCCTGATACCAAACTCAAAATTAAAAAAACCGGTCACCTAAGTTATAACCTCTCGATGGCAATGTGCTCCTGCAGTTCTGGTGTTGTACATGTATTTCGTAATATTTTGCAACTGTTGAATATACTCCAGTTATTTTCGCAAAAACAGTTGCTGCCTTTTGTTGGGTAGCTCCACCAGGCAAAATATCCAATGAAGTTCCATTATAGTTTTGTTGGCTATGCAGGTCTCTGTGCTGCAAAGTGACCTCTACCGTCTGTCCCGGAGATATTATGCCGACTGCTGGAGAGACCTTTAGCCATGCAGGAAAAGCAGAGAAATGTGTGCTGGACAAATTTGGTGCTTGTCCAATGATCTCAAAACAAGCGATGACTTCTGTTCTGTTTTGCAATTTCACAACAGATGGATTCCGATCTTGCAAGATGATGTTAGAATTATTTATATTTACTCCAGGGAATGCTTCAAGTTCCTGAAGCAAATGCACCACTTTATTATTTGAGCTCATTAGCTCCACATATTTCTGCCTCATTGTCTGTTTGTCAACATAAGCAATATCCAAATTGAACACAGATTTTATAGGTTTGTGATCACTATCTGTTGCTTCCATGCAAGAGTCATACAGTGATATTGAAGAAACCACAGGACAATCCAAGGAACACTCATTCCCTGAACTAACTCGGCTATCACGATATAGGATTCTGTCACACCAGGCAGGAATGCGCCTCTTCTCACTGCTATCATACCCTGATAAGCCTGCTGTATGTTTCTCAAATTTGTATGTAGGGGGAAACTTGAAATCCCCTTCACGTAGTCCCTGGAAGACTCTCCCAGATCTCATTTCTGCTCGCAGTTGGTCATTATTTTTTAGCCAGTCAAAGCATCTCCGGGAAACTAAGCCCATTGCATCATCATAGGAAATATCATAAAGGCGGTAATTGAAGTCACCAAGAAAGACAATCATGTCCGTGTCTGACAACTCAGGCATTCTTGATCCATTTGCTCCTCGAAGAAGCTGGCCAGTAGAACTAGAAACTGATGTTGTCATTATTCCACTCGAAGGGGTGGCAAAGGTCATTGTTCTAAAGACATGGTCAAAATCTTCATTCCGTCGACTCACAGCTTCCATATGAGCAGCAAAATGGCAATTTACAAAGCAAATACTCCTATCATGTATTCTCATCCTCAATCCCACTGCTCCCTTGTTGCCGATTGCTCGCCCTAATCCACATGCTACCGCAGCATTATCAATATCACCAATGAACTGCTTAAGATGTGTTCTGACCCATACACAGATAAGCAATCCAGCCATCTGCCTCGAGCCAACACGCTCAAAAGAGTAACCCTTTAACTGCTGCCCAATTGCATCCAACCACCAATCTCCGTTTGGGCTTCCCTCTAGCCCAACTGTTTCTTTAGCTGCAGACATTGCAAGAAAACCAGCACCCATGTCCACCTCCTGCAATCCAACTACCACTAACCCAACCTCTGGTGTCGGTAACTTTAGCCAAGCTCTTAGTGACTCATAAGATGCCTTTTCTTGCCCGACATTCCAAGAACCCACCAACACTTTCATGTATTCAAATTGTTTGTATAATGGCTCAGCCTCAATCAAAGTAGAACGCATAATGTTGTCAATAGGCCCTGGAGATGACAAATTCCATCCACGGACTCCGCCATGACCAGCCATTGTAAAGATGTATGAACCTCCAACAGCCATACTCAGAACTGGACTGCTATGTGCGATCCAGCCTCCTAGTAAGTTACCTTCCAAGTCCAACAGCTGAATACTACCATCCATGTAACCGGCCCATATTCTTGTCCCAAAGCTGAAAATGCTTTGAACAGAACACAAATGATGCTGAAACTCTTGCAAACGGTTACCGTTGCCATCCCATCGAGCAAGACATCCATTTGCAGACCCTGTCCAGATCATCCCATCAATTGACATTGCTAATGCTTCTATTCTTTGAGAATCATCTCCAAATCCTGCTTTAGCAGCAACTCTCCGGACTGCATCAGCCGCTCCCATTAAAGCATTTCGTGATCTCTGGAAAAATCCAACAGGACTGCGAGCTTTATCTTTCCTTGGAGCAGAGAAAAGGTTTTGCTTTGTTTCATAGCCAAATGGATCCTGAGAAGATAAGATATCAAAACGAGTATCGACTTGGCCATCCACGCTAATCACTTTCAGAAGCTCCTTGGTGCAAGAATCCCAGAGTGCAAGTGAGAGGTAACCAGCACTCCATACTTTTGATCTAGAATTGTCAGACAACAGAAGTTTTACATCTACGGCAGGCAAGGGACAGGCCCCTCCATCACTGACCATGGCTCTAAGGTCAATGAATGATCTTTCAACTAAAAAGGAGGTCTTACGCTTTTCTTCTCTTTGTAAAGAAAGGGACTTCTCAATTCCTTCTTCATACCAAACTTTGATTACTCCCCCTTCAGAGCCAGACCACAAATCACCTTAAATGTAAAGGCTCCTTAAGTGAAAGGTTCGTGTCTTATGAGTGTAATTTGACGACAATGCATTGCTGTCCACATATTAACTGCGGACAAAAAGATATGATATCTGTCTGTTCATACCTTAGTACCTAGGTTTTACTAAATGGAAAGAATTTAAGTCCTTGTGCATTGATTGCTAGAATATATTATTATTACCTGCTTGAACGTTGGGCACCATGAAATAATTATATTCTAGATACGATAATGAGCACCATAAACATGATTGCTATATTCTAGATGATGTTGAAGAATTATACAGTACTGTTTATGGTAATTATCTCATAATCATTGGATTTCCATCTGTATTTTACAAGAATGCCCTGCAGAACATAGATTTATA

Coding Potentia
Explanation CPC Score
noncoding -1.1439
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0163500.1 2 16360590 C T
Osa02LNT0163500.1 2 16360744 C T
Osa02LNT0163500.1 2 16361617 C A
Osa02LNT0163500.1 2 16363210 T C
Osa02LNT0163500.1 2 16363533 A G
Osa02LNT0163500.1 2 16365373 T C
Osa02LNT0163500.1 2 16362771 C T
Osa02LNT0163500.1 2 16360799 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0163500.1 osa-miR5815 Translation 4.5 12.678 1 24
Osa02LNT0163500.1 osa-miR6256 Cleavage 4.5 9.199 1 22
Osa02LNT0163500.1 osa-miR2095-5p Cleavage 4.0 12.205 1 22
Osa02LNT0163500.1 osa-miR2863c Cleavage 4.5 18.575 1 24
Osa02LNT0163500.1 osa-miR5155 Translation 5.0 16.043 1 24
Osa02LNT0163500.1 osa-miR5486 Cleavage 4.0 17.673 1 21
Osa02LNT0163500.1 osa-miR5510 Translation 4.0 16.431 1 21
Osa02LNT0163500.1 osa-miR166k-5p Cleavage 3.5 10.52 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0163500.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0163500.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0163500.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0163500.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0163500.1 2 d50 Morphological trait Dwarf nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus