>Osa02LNT0163900.1

AGGACAATAGGAAACCTTAGCATCAATAAAGAATTACAAATGAAGATGAAACTGGCTTGTCTGACAGAGATCAAAGACTGTACTTAACAGCGCCATCTTAAGCAAAGATGAATCGCTAATATTAACCTATTCTATACACTGCCAAATGTGGCACTATGCTATGGACTACCTATATATACATGGTGCACTAACCTCTTTTCTGTGGTCTACACTAGAGCCTTGTTCCAGGCATTCCTCAGTCATACAGGTGCATATATGGGCTAACTATACGCTATTATTGTAAGTTATAAATAGGTGAAAAGAAAACGATGAAGTAGTCATGGCTTCCGGAGAGCTGACGCAGCTCCCATTATTACAGCCATTACAACCCCGAGTCCGGCACCAAGTGATGCACCTACGGCAGCAGCTGTAACAGAGCCATCTCTCTTCTGGGGCTTCCGCTTCCCTTGCAGAGATGCTGCTTTCTCTCTCTCCAGCTCCAGCGACAATCTCTCACGAGAAAGCTCCTCAAATGCTGGCTCTTCATTGCTGTGAATTACTTGATGTACAAGTTGACGAAGGGCAGTGACACCCTCAACATGCATAACAATGTCCTTCCTCTGAAATGGTGAGAGTGAAAAGTTTACTGGATAAAAAGCAGCTCTGCCTGAAGGATTCTCGTTCCTCAGACTGCCACTAGCTGAACTGATGGGGCGCAAACTATTTGTGGCACTTGGCATTAGAAATGGGGAAGAGTTAACAACTTTAGTCATGTCAGGAGAGGCTTGATAAGCTTCCATTGCTGAAGTGATCAATGCGTTCTGTTCATGTGCACTGACGGAGAATTTATTAGTTATTGCAAGGATCCATGGAATGCCAAGAGCCTTGGCTTCATCCAAGAGAAGTGAAAGCGCTGGCTGTGGTTGAGAAGTGTTGGACTGGTGATACTGAGGAATTCGATGAGCAAGGTTATGCACAACAATAACTAAGTCAGTCTTCCTGCTGAGATCATGTATCCCTAACTGCAATTCTTCTTTGAACTGCCTAACTTCTAAAGGTAGTTCCTGCAAGTTCACTGTTGCCGAATCTACGTAGCACAAACCATTTGAAACTCCTTTTCCATGCAAATCTACATGTATGCACTCAAGAACTGCTTTGCTTCTTTCTTTAAATTGTCCTAACAATGCTTTTAGCAAGGAAGTTTTACCTGCTCCCTCTAGTCCAAGCAATCGCACCCTCCTGGTCCTCACATAGACCTCTTTACATATAGTTACAAAATCACTTGTACCGTATATAAGAAATTCATTCAAACCCTTGCAACAACCTTTATCTTCAAACAATGAGTCAAATCCATAATCTGGATTTGACCCTGTACCCGTGGCCACAGAAACCATAAAATCTTCACTGATATAATTTGGAGGCTGCTTTAGTGGCTGACCAACTAGAATGCGCATTTTTTGCAATGTAGGCTGCACTTCCTGATCTGATGAATATGACACCATTGGTAGAGTTTCAATGACTGTTGAATACCAGTTTCCATTTATCTGAGCCTGGAAAAGAGTGCACATATGCAGGTCATGTCCAATTATATCAACTTTCAGGGGTTCAGCACTTTTATCACCAGGGTAGCCATTCCATCCAAGAGGAAGAATAGAAGTGGCAGTTCGAATAGTAGGAGGCTCCACAATATGGCCAAGTTCAACAGAATCAGCAGCTGTTAGACCGAGTAGTTCTTGTAGATGTGAAAATTGTGGCAATTGTTCAATGCCTGTAAAAAGCTGGGCATTTGCAGACATGCAGATGTCATATATTTTCTGGAAGCGAGCCCTATAAGATTTCATTGAGTGTGATTGCAAACGCTCTCTTAATTCCGTTATAACTGACTGCACCGATGTCATCTTGGAGTACTCTGAATCTGAAAGTGTATTGACTGATGAATCTCCCAACAGGTATAGCTCACCAAATGGAACATATGAAGGCAAAGAAGGTACTCTGTTCCACCGTTTTGAACCCCCAACTTCAGAAACATTAGTTTTATCAGTCTTGTTATTTTCTTCAGTGAGCCCTCCATCTTTATCAGATAAAGGGGTAAGAGCAATTCCTTCTGAACCTTCTTGAATCTCAAGAGATTGCAGCCCCTCTTCTGATTCATCAACCTTTGATTGCAAGAAATTATCCAACTGTGATGGTGCCTTTCCAAAACTATTTGTTTGTTTCTGAAGCACACTTAAACTTTTTCGCACTCCTTCCAAAGGAACAAGCTTTGAAAGTCTCCAGAGTGACTTTTGAACAGGACCAACACCTAGAACAAGTTGCTCCCCATTGTTCTCTTTTGAACATACAGATTTTGTGTCCTTTTCTTCATCAGATTTTGCGTTAGTGTTATCAGGTGTTTGGGCATTATAGTGGTGAAAGTATGCCGGCGATAAAATACGTGGCACCAAGTCCTCTGGAATACAGTAGGATTTGAAATAATCTTGCCATCCTCTTCGATGAACGTAGTCTCTCAGTGCAGCATTCCCAACTGGTGGCTGAGAAAACGTGATACACTTCACCTGAAGCCTGTCAGGCTCTTTAGATGGAGATGAGGATGCAAGTACTCTTAATATTGCAAGGGTAGCCAAAGCAGCTACCGCTCCACCAAGCGAATGTCCGCACAGAACAAGTTTCCTGTTCTTTTTCTGAGCAAGTTTGTATAGCTCCAGAGCAGGAATTCCATTGGCACGTGCTAAGAAACCCCGGTGTGCAGCAGGTTTTGATTTTCTCAACTGTTTTGATTTCTCTCGATAAGATGTCCCGAGGTTTTCTTCACCCTTCTGGTCATCATTTTGCACACACTCAACAGCATCAGCCAAATCCTGTGCGGTATCCTCATGAAATACGGTTCCTTGGAGTATATTCACATCAGCAATAATATCTTTGTATTGTTTTGTACCGATAAATGTAGCAAATAATGTATCACCAGCCTCTGCTAACACATACCTATGTCCTACATGATCCAAGGATGGCTGAACACGCTCAAGAGACACAATGTGTCCACCAAAATCAGATTTGAACTTATTAATATATCTCATCATCTCAGAAACAGGCCTCTTGTAGACGCACTCGGCGAGGACGACGGCGCAGAGCAGCTCCTGGAGCTCGGCGACGGTGTCGACGCGGACGGCGCGGCAGAGCTCGCGGAGCTGGCGGCGGCGGCGCTCGAACTCCTCCCGGAACGCGCGCTCCCGCTGGCGCCTCCGGTCGCCCGGCCACGCGGGC

Explanation	CPC Score
noncoding (weak)	-0.91609

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0163900.1	2	16605279	T	A
Osa02LNT0163900.1	2	16605458	C	G
Osa02LNT0163900.1	2	16604361	T	C
Osa02LNT0163900.1	2	16604743	T	C
Osa02LNT0163900.1	2	16604827	A	G
Osa02LNT0163900.1	2	16604947	G	T
Osa02LNT0163900.1	2	16605948	A	C
Osa02LNT0163900.1	2	16606446	C	T
Osa02LNT0163900.1	2	16606914	G	C
Osa02LNT0163900.1	2	16607998	T	C
Osa02LNT0163900.1	2	16608722	T	C
Osa02LNT0163900.1	2	16608923	T	C
Osa02LNT0163900.1	2	16609846	G	A
Osa02LNT0163900.1	2	16610540	G	C
Osa02LNT0163900.1	2	16610792	A	G
Osa02LNT0163900.1	2	16611697	T	A
Osa02LNT0163900.1	2	16603436	T	C
Osa02LNT0163900.1	2	16603931	A	T
Osa02LNT0163900.1	2	16604048	G	A
Osa02LNT0163900.1	2	16604121	A	G
Osa02LNT0163900.1	2	16603963	A	G
Osa02LNT0163900.1	2	16603815	G	A
Osa02LNT0163900.1	2	16603958	A	G
Osa02LNT0163900.1	2	16609109	T	A
Osa02LNT0163900.1	2	16609313	C	T
Osa02LNT0163900.1	2	16609317	A	C
Osa02LNT0163900.1	2	16609453	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa02LNT0163900.1	DTM_#DNAt_MULE_japo_Os0089	Chr2	-	16603426	16604140	714

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0163900.1	osa-miR5544	Cleavage	4.5	16.158	1	22
Osa02LNT0163900.1	osa-miR5825	Cleavage	4.0	14.161	1	24
Osa02LNT0163900.1	osa-miR6248	Cleavage	4.0	14.228	1	21
Osa02LNT0163900.1	osa-miR396c-3p	Cleavage	4.0	16.248	1	21
Osa02LNT0163900.1	osa-miR159a.1	Translation	4.5	13.756	1	21
Osa02LNT0163900.1	osa-miR159b	Translation	4.5	13.756	1	21
Osa02LNT0163900.1	osa-miR159f	Translation	4.0	13.756	1	21
Osa02LNT0163900.1	osa-miR1430	Cleavage	4.0	13.123	1	21
Osa02LNT0163900.1	osa-miR2863b	Cleavage	4.5	15.381	1	21
Osa02LNT0163900.1	osa-miR2871a-5p	Cleavage	5.0	16.296	1	24
Osa02LNT0163900.1	osa-miR2871a-3p	Translation	5.0	21.53	1	21
Osa02LNT0163900.1	osa-miR2871b	Translation	5.0	21.53	1	21
Osa02LNT0163900.1	osa-miR2931	Cleavage	5.0	11.944	1	20
Osa02LNT0163900.1	osa-miR2931	Cleavage	5.0	19.001	1	20
Osa02LNT0163900.1	osa-miR2931	Translation	5.0	15.885	1	20
Osa02LNT0163900.1	osa-miR5152-5p	Translation	5.0	13.857	1	21
Osa02LNT0163900.1	osa-miR5832	Cleavage	3.0	19.705	1	21
Osa02LNT0163900.1	osa-miR6248	Translation	5.0	14.136	1	21
Osa02LNT0163900.1	osa-miR6251	Translation	4.5	14.715	1	21
Osa02LNT0163900.1	osa-miR415	Cleavage	5.0	12.177	1	21
Osa02LNT0163900.1	osa-miR1429-3p	Cleavage	3.5	9.599	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0163900.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0163900.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171
Osa02LNT0163900.1	2	d50	Morphological trait	Dwarf	nan	nan
Osa02LNT0163900.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0163900.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus