\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0164000.3

ACTAGGTAGTCTATATATGCAGCCCCAGTTGTGCCTGGAAACCCCATGTACGAAACCTGGATGGGGGCTGGTTGCAGTGCAAAAATTTCATTCCTGGCACCCTTTGTGTAACCATTAAGGTTTATTAATATTTGTATTTTGTCTTGATTAATGATTCTGGCAATCATATCAGAGGTCATGGCAGACACATCCACAAAATGCTCAGCCTCAGACTGAATACGCTGCCTCCATTCAGTACCATCATTTTGACTCAGCGCATAGCAGAAGACCTGTTGCGCCCAAACATGAGTTGCACATGAGATTTCAAACATATGAACAATATGCTAGAGAGAGAGAGAGAAGGTGAAACAACCTCAACATTGTCACGGTCATGCATTCCAAATACTGAACCCATGAGATGGGAGAGGGGATGATTCCCAAAATCGCTGCTAACATATCCAACCCTTAGTCGACAGTGTTTACCCTCTGCTTTGACAGGAACAGGAGGGGGATGCACAAAGGACGGCAATCCAAAACGAGAGGCAATCAAGGAACAATGAGCAGCATATTTACAGCTGGTAAGTA

Coding Potentia
Explanation CPC Score
noncoding -1.31585
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0164000.3 2 17048985 A G
Osa02LNT0164000.3 2 17048412 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0164000.3 osa-miR156f-3p Translation 5.0 22.203 1 22
Osa02LNT0164000.3 osa-miR156h-3p Translation 5.0 22.203 1 22
Osa02LNT0164000.3 osa-miR156j-3p Translation 4.5 22.203 1 22
Osa02LNT0164000.3 osa-miR156l-3p Translation 5.0 22.203 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0164000.3 2 d50 Morphological trait Dwarf nan nan
Osa02LNT0164000.3 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0164000.3 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0164000.3 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0164000.3 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus