\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0164200.1

TAACAATATAGATTTGTATCATAATCAGTGATAATAGTTTGTTCATAATCAGCGATAATACTATTCTCCGCAAGTAAAAAAAGTACTAAGATATAATTATACGGTGTAATTGATACTAGCTGGTGGTCTGATGGGAGTCACAGAATACATGAACCTGGTGAAAACCTTCAGCAACTAGTGGCATGGCTGACGGCTTTGCAAACACAAGTGTTACTCATGTACAAAAGTTAGTTCTCTCTCGAACAGATAGGCAATTCAAGCAGCACGAGACGCCTTCAATGATTTCAAAGCCTCCCGTAGCGCATTTTCAATCTCAATATTCGCTGGGTCCAGTTTGAAACCATCAAGAAATGCATTGCAGGCCTTTTCATAGTCCTTCATGAACATGTGAGCGGTCCCTTCCCTGTAGCAGCCCTTGGGCCAATCAGGGCGCAATATCCTGCAAACTTGAGCAGTTTCCAAAGCATTCATTCCTTTACCCATCTTAAGCCAGCAAACGCTCGTGTTAGAGTACAAGGTCATATCTTCAGGGTCGTGCTCGATCGCCATATTGTAGAGTTTTGCGGCAGTAAGATAGTCTTTTCTCATGTATGCCCTATTTCCTTCCAACTTCAGATCAGCTGGTCTTATTTTGAAGAAAGGGTCAACCTCCACCTGTTTGTTTACATAAGTAATCATCCCATCAACACTCCAATCATGCACAGATGGAATACGAGAAGTTACTGGAAGTAGGATCTCCACATCTTTCCTCCTGTTCTGACGTGCAGCAATTTCTATGGGCAGAAACCCAAATTTATCAGGCACATCAGGATCAGCACCACCCTCCAGTAAGCACTTATAGAAATCAGTTAAGCCTTCAGTTGCAGCAACTATTAAGGGGGTAAAAGTACCAACACCCTTAACATCAGCACCAGCCTCAATCAAAAGCTTACAACATTTCAGTGAGCGACCCATCATCGCAGCAATGAGAGGTGTACAAACTGTAGAGAATGTCTTGTTACAATCTGCATGGTGGTCCAACAAAATCTTCATACAACCATCCTGACTTTTTGAGGCAGCAACATGCAGTGGTGTCCCATGGTCAGAAGATGAATCAACATTAGCACCTTTCACCAGTAAGACCTTTACTATCTCGCAATGTCCTTGTTCAACTGCTAGATGGAGAGGGGTACACCCTTTTTCATTTGGCTTATCTGGATTTGCACCATGATCAAGAAGATAGCTCACAGTATCCACAATCCCACCATAAATTGC

Coding Potentia
Explanation CPC Score
noncoding -1.26735
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0164200.1 2 17245013 G A
Osa02LNT0164200.1 2 17247076 A G
Osa02LNT0164200.1 2 17247892 C T
Osa02LNT0164200.1 2 17248014 T C
Osa02LNT0164200.1 2 17249250 C T
Osa02LNT0164200.1 2 17249915 T G
Osa02LNT0164200.1 2 17251585 G A
Osa02LNT0164200.1 2 17251979 A G
Osa02LNT0164200.1 2 17252067 G C
Osa02LNT0164200.1 2 17252790 A G
Osa02LNT0164200.1 2 17252574 A G
Osa02LNT0164200.1 2 17246077 C T
Osa02LNT0164200.1 2 17245888 T C
Osa02LNT0164200.1 2 17246488 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0164200.1 osa-miR5837.1 Translation 4.0 14.115 1 21
Osa02LNT0164200.1 osa-miR167e-3p Translation 4.0 18.605 1 21
Osa02LNT0164200.1 osa-miR167i-3p Translation 4.0 18.605 1 21
Osa02LNT0164200.1 osa-miR444e Cleavage 4.5 16.539 1 21
Osa02LNT0164200.1 osa-miR444f Cleavage 5.0 16.539 1 21
Osa02LNT0164200.1 osa-miR1862a Translation 4.5 18.805 1 24
Osa02LNT0164200.1 osa-miR1862b Translation 4.5 18.805 1 24
Osa02LNT0164200.1 osa-miR1862c Translation 4.5 18.805 1 24
Osa02LNT0164200.1 osa-miR1862d Cleavage 3.0 18.805 1 24
Osa02LNT0164200.1 osa-miR444a-3p.2 Cleavage 4.5 16.539 1 21
Osa02LNT0164200.1 osa-miR444d.2 Cleavage 4.5 16.539 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0164200.1 2 nan Resistance or Tolerance Drought tolerance RG83 RG171
Osa02LNT0164200.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0164200.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0164200.1 2 qSS-2 Physiological trait Sterility RM301 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus