>Osa02LNT0164300.1

TCGTTGAGCTTGTTCAGTTGTTTAGGAACTATTTACAAGACCAGGTGGGGTATTTCACAAAACGGCCTTTGCAACAGCGCTACGCTGGCAGATTATCTTATGATTTTCTTCTGAGAAGATGGCAATCCAATACCCACTTTGGCAGCATGAGATATCTTCAAGGATTCGAAAGATTTCCTTAATGCTTCTGCAATCTCATCACTTGCTGGATCCAATTTGAGTCCATCAAAAAACGCATCACATGCCTTTTCAAAGTCCTTCAGTAACATTTGAGCAGCACCTTCCAGATAGCATGCCTTCGACCAGTCAGAATGCATCAACCTGCAAATTTGAGCATCCTGCAATGCATTGACCCCTGCACCCATCTTAAGCCAGCAAAGGCTCCTATTTGAGAATAGGGTTGCATCATGCGGGCAGATATCTGTTAGCCTAGTATAGAGCTTCATTGCAGTAATGTAATCTTGTCTCCTGTATGCCTCACTTGCTGCTAACTTCATATCAGCTGGACTCATTTTGTACATAGGGTCATCCTCCACCGATGGACACGATTTCACATAACTAATTACCCCATCAACACTCCAGTCACACACAGATGGAATACGAGAAGTTACGGGAAGTAAGATCTCAACATCTTTCCTCCTATTGTTATATGCAGCGAGTTCTATTGGAAGGTGGCCGAATTCATCTGGAACATTAGGATCTGCACCAGCCTCCAGTAAGCACTTATAGAAGTCAGTTTGCCCGTTGTTTGCAGCAGTTATTAAGGGAGTTACCGTACCAACACCCTTCACATCAGCACCAGCCTTAAGCAGAAGCACAACACATTTCAGCGAGCCAGCATTGAGAGCCATGATGAGAGGTGTAAACACAGGTTTGAGTAGCTTGTTAAAATCTGCATGGTGGTCCAACAAAATCTTCATCACACCATCCTGCTGGCAGAAAGCAGAAAGATGCAGTGGTGTCCCATGAGAAGAAAATGAGTCAACATGAGCACCTCTTGAGAGTAAGATTTTTGCTATTTCACACTCTCCTGAAACAGCTGCCACATGGAGAGGTGTATATCCTTTATTATCAGGCTTATCTGGATTGGAACCATGGTCAAGAAGATACTTCACACCATCGATGGAACGACCACGAACTGCATAAGCCAGAGGTGTATCGCCTGAATCGTCGGCGGCGTCGACGTCCACCTGGAGCTCCTCGACCAGGTACGAGCACACCGCGAGCATCCCGCGGCCGGAGGAGACGTGCAGCGCCCCGGCGCCCCGGTCCCTCACCCCCTCCACCGTCTCCCGGAGGCGGCCCTTCCCGCCGTCCAGCTTGCCCGCGATCCTCTTGAAGGCGGCGAGGTCGCCGTCCGCCGCTGCCTGGAGGAGCCGCCGCGTCGGCGCCCGGGGATCTGCGCGAGAGGCCGAGTAAGGTGG

Explanation	CPC Score
noncoding	-1.05544

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0164300.1	2	17258529	T	A
Osa02LNT0164300.1	2	17260450	A	G
Osa02LNT0164300.1	2	17260515	A	G
Osa02LNT0164300.1	2	17260611	A	T
Osa02LNT0164300.1	2	17261568	T	A
Osa02LNT0164300.1	2	17261736	G	A
Osa02LNT0164300.1	2	17261912	G	T
Osa02LNT0164300.1	2	17262033	A	C
Osa02LNT0164300.1	2	17262876	T	A
Osa02LNT0164300.1	2	17263787	A	G
Osa02LNT0164300.1	2	17264920	G	A
Osa02LNT0164300.1	2	17264945	C	T
Osa02LNT0164300.1	2	17265130	A	G
Osa02LNT0164300.1	2	17261187	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0164300.1	osa-miR5837.1	Translation	4.0	17.736	1	21
Osa02LNT0164300.1	osa-miR160f-3p	Translation	5.0	14.658	1	21
Osa02LNT0164300.1	osa-miR160f-3p	Cleavage	4.5	20.333	1	21
Osa02LNT0164300.1	osa-miR528-3p	Cleavage	5.0	19.592	1	21
Osa02LNT0164300.1	osa-miR2092-5p	Cleavage	5.0	18.683	1	21
Osa02LNT0164300.1	osa-miR5144-5p	Cleavage	4.0	24.227	1	21
Osa02LNT0164300.1	osa-miR5511	Cleavage	5.0	19.566	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0164300.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0164300.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0164300.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0164300.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus