>Osa02LNT0164700.1

CGATCACATTTTATCAACTCAAACATGTCATAAGAACATTCAGTCTTAAATAAAATTGTCATAAGAACATCCAGTACATCTCTGGTATTCATACATTCCAGCTACCAATTCGAATATTTTCCAGATGCTAACCCCAGGGCACAAGATTAACTTCGTAATGCTCGTCAGAGTTATGGACTTGAAACACCGTGATGTTCAGCAGTCGTCCACCCGTTGGCTACTTAGCTCGACTTACACAAAAAAAAAAAGAAAGAAAAAAAAGATAAAGAAAAAAAAGGAGATAGCCCATTCTGGGTATCGAAGTCTCTGTGCAAAAGCTGATAACGCAAAACCTGTGGATTCAGCGAACTAAAGGCTCTTCTGTGCAAAAGGTGAGACGCCTGTGGACAACGTGGAGGAGGACCAGAACTCTTTGCCCCCCTTTGCAACACCCATGATGTTTCACCTAGCCTCCGTGCTTGCAGATGTCTTCAAGGACTCCAGAGCTTCCCGAAATGCATCCTCAATCTCAGAGTTCCCTGGATCCAACTTGAATCCATTGTAAAGTGCTTCGCAAGCACTCTCATAGTCCTTCAGTAACATCAGAGCAGCACCCAGCCGGTAGTAGGCCTTTGGCCAGTCAGACCGCAACTTCCTACATTCATGAGCATCCAGCAAAGCCTTGCCTCCATCACCCATGCGATGCCAGCAAAGGCTCCTATTTGAGAACAAGGTAGCATCATCAGGGTAAAGGTACAGTGCCTTACTGTAGAATCCTGTTGCAGATAGATAATCCTTTTTCTCGACAGCCTTATTACCCAGTGACTTTAAATCTGTTGCTTTCCTTTTATTGACAGGCTCACCATTATCAGAAATGTTACAGTTGGCACCAGTCTCTTCCATTAAGTAATTGAAGCACTCTGTAGAACCACTGTTTTCAGCAGTTAACATGCGATCTTCACTGACAACAGCACCAACCTTAATCAGGAGATTTATGCATTTTAATTCACCAGAATCCATAGCAGTATCAAGAGGTGTCAGACCATCTACCATCTTGTTAAAATCTGCATTGTGGTCCAATAAAATCTTCATAGCACCATCTCGCCCTTCAGTAGCAGCAACATGAAGTGGTGTCCCACAGTAAGCTACTGGGTCCACACAAGCTCCTTTTGCAAGTAATAGCTGTACCATTCCACATTCTCCTAAACAAATGGCGAAATGTATAGGGGTGAGGCCGTTATGGCTGGCTTTGTTTGCGTCGGCACCACGATCAAGAAGATACTCGACAGTGCTTACATGATTGAAGACTATTGCAATAATCAGAGGAGTCCTACCTTCCTGGTCAGTGTCATCCACGTCCAGCCGCAGCTCCTCGACGAGGTAGCGGCACACCTCCAGCCTCCCTTTGCTGGCGGCGATGTGCAGCGCCCCCATCCCGTCCAACGGCCCCGTCCCCCGCAGCCTCGCCGCCTGCACCGCCTCCCCGAGCCGCCCCCTCCC

Explanation	CPC Score
noncoding	-1.0407

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0164700.1	2	17309332	A	T
Osa02LNT0164700.1	2	17308257	C	T
Osa02LNT0164700.1	2	17309740	G	A
Osa02LNT0164700.1	2	17310399	A	G
Osa02LNT0164700.1	2	17310456	A	G
Osa02LNT0164700.1	2	17310820	T	C
Osa02LNT0164700.1	2	17311074	C	T
Osa02LNT0164700.1	2	17311450	G	A
Osa02LNT0164700.1	2	17311497	C	T
Osa02LNT0164700.1	2	17311662	A	G
Osa02LNT0164700.1	2	17313024	G	A
Osa02LNT0164700.1	2	17313241	C	T
Osa02LNT0164700.1	2	17313494	A	G
Osa02LNT0164700.1	2	17314311	A	C
Osa02LNT0164700.1	2	17315104	T	A
Osa02LNT0164700.1	2	17315466	G	C
Osa02LNT0164700.1	2	17314672	T	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0164700.1	osa-miR159a.1	Translation	5.0	11.528	1	21
Osa02LNT0164700.1	osa-miR159b	Translation	5.0	11.528	1	21
Osa02LNT0164700.1	osa-miR1860-3p	Translation	5.0	14.306	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0164700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0164700.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0164700.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0164700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG83	RG171

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus