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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0166000.1

TCCCCACTAATTTTTGTTACCTTGCGCTGTTGCACACGCCACCCCTCCTCCTCTCCATTAAATACTTCAGATACACGCAACACACACAGGAAGGCACACCGGATATCCTTCCTCCAATGATCCTTATCCTGTTGTCCTTCCTTTGAGGTGGAGCACAGCAACAGCATTATTGATCCCGTAATTGATTACGTCCTGGATTCTGTATGCTCATCATCCTACTACAATCAAACAGTTCTACAGTTGAGGGACGGAATGGTTTTGAGACCATAAGAGCATCCTCACCAAATACTCCATCCCATCATCCCCAAGTGTCGAGCTCCCAATCAAACTCACGCCACCATCCGGACTGCATACCATGAGGGGAGTAACAGTAGAGAGGAGCTGCATACCGGATTTGGTGGTGGAAATTTGCCAGAGTGAAGACAGAGAAGCGCTGGATCTGGTAGAGAGATCGCTGGAGCACCCCGCCGCTCGTGCCATGCCACTGCCTGCGCTATCCGAAGCTTCTCTGCCCACAACTCCTGTCGTCCCCGCTACCCACACTCGCATCGCCATCCCAGCCGCTCGCATCTCTCCGCTTGTGCCACCCATCATCCACTTGCACCTTTGGCCGT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.944174
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0166000.1 2 18713745 G T
Osa02LNT0166000.1 2 18713923 T C
Osa02LNT0166000.1 2 18713959 A G
Osa02LNT0166000.1 2 18714216 C A
Osa02LNT0166000.1 2 18714427 T C
Osa02LNT0166000.1 2 18714448 A G
Osa02LNT0166000.1 2 18714523 A G
Osa02LNT0166000.1 2 18714654 G T
Osa02LNT0166000.1 2 18714676 A G
Osa02LNT0166000.1 2 18714804 A G
Osa02LNT0166000.1 2 18716297 C T
Osa02LNT0166000.1 2 18716358 C T
Osa02LNT0166000.1 2 18716945 A C
Osa02LNT0166000.1 2 18716947 A G
Osa02LNT0166000.1 2 18716952 T C
Osa02LNT0166000.1 2 18717014 A G
Osa02LNT0166000.1 2 18717031 A G
Osa02LNT0166000.1 2 18714782 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0166000.1 osa-miR395v Cleavage 5.0 5.172 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0166000.1 2 nan Morphological trait Root RG171 RG157
Osa02LNT0166000.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0166000.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0166000.1 2 2-3SY Physiological trait Source activity RG171 RG157
Osa02LNT0166000.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus