>Osa02LNT0166500.4

AACAGAACTATATGTAACATCAATATAACACCAGAACATGGTAGAGTTACTGACAAAAATGTTTTTTACCAGGTACGCACAAAGAGTCAACATGGGGTTCAAACCCTTAATTTCAAGACATGATCTTACACGCAGGTATGAAGAAGACGAATCCCAGATAGAAACCGCTAATCTGAGGAAACTCAGCACCATAACCAGAATATAGAAGAAAAAAAAACTACCACTCGCTTGATTTGAGCAGCAAGTTCGAAACTACGAACCTTTGACCTTTACACGAATCATACACAATTCAAATGTTTCTTCAGAGACAACAGTTTCCAATCTGCAGTGCCAAGCAATTCATGCCTCAATTCAATTGCCCTGCACCACATTGTCAACATGAGTAGCAACAAGACAAGTACGGACAATGCGCCACTGATATTAGACCTTGGCTACAAATTTCCAGCAGATCCATATTTCTTACTTGTAACATGTCCAGACTATCCATCTTTCCACCTTTTCACACATCAATGGCTTTAAAATTTGCATGATGATGTGGCCCAACAGCCAAAACCATACCAACAAGACCATTAGAATGTGCATCTTCTATCAACTAAGAATCACAAATAGACGGCACCATATATTAACTGATTGCTTGAATTTCTCTTGTTCTCATGTAGGTCATGAACTGCCCTGGTATTTCAGCAAGAAGTGACTGAACTGTCGAAATCCCACTGCCATGGGCATCCTTCATTGGGGCGAACTGTATCATATCCCTTGATGCCACTCTTCCTGTTGAGCTTTCTAGTCTCTCTCCTTTATTTGGATCTAGAAACTCCATTTCCTTGAAGTCCGCTCCACCAACTCCAACAACAAGAATGGACAAAGGAAAATCAGATGCCTTTATGATTGCATCGATAGTCTCTTGGAAATCAGTCACCACACCATCCGTGACTATTAACAGAACAAAGTATTTCTGCTGGTTGTTGGCAAGTGATTGGTTTGCTATTGCCGTAGCAGTGCTAACTACTGGACCAAATAGGGTGGGCCCAGCCAATGAGACATTACGAAGCGCACTGATATAAGCTGACATAATCCCTTGTATTCCCTCAACCTCAGGTTGATAGGTGCTACCATTCAGGTTGAAACAGTGGGAAACAGGACCATCAATAGGTCTAGCACCAAAGCCCCATGAGGGAAACCGCTTAGCTGGGTCATAGTACTGTAGTACATCTCCTACTTCCAGTATTGCTCTCTGATATGCATTTGGCCGACCAGTGGGATCAATATAATGCAAGGAATCTGGAAGCCGTGGATTTCCATTTGAAGCTGTGAAGTCTACGGCTACCATAAAATTCAATTGGCACCCAGCAGAAATATAATCTAGAAAAGTCTGTCTGTTGTTCTCAAGATATTTCTCCACATACACTTGACTCTTTAGTACCTCCTTACTGTGACTATCATGAGCAGTGCTGGCAGGAACAAAGAAATTTTCACCATCCTGACTATGATACATCTTTTCCAATTCTGCGACCGATTTTACTATCTTGCTGTCGAATTACAAAGGGTATCCTATTAGGTCATGTTTGCCGTTGCTACTGAAGTTGAAGCACTCTATGATTAAAGGGTTCTCCTTACTTCCAATCTGTTGGAGATTCAAGATCACTGGCTTCCACTTGGGATTGAGGTCGTTCTTCCTTACTTCCGTCTTACAAATTGGAACAGGCACTCCACTCTCTGATATTCTAGATATTAGTAAAAAGGGATCACTTTTTGAGAGAAGGTCCTTGATTTCAAGATCTGAACAGCGGAATACCATCTCCATTATTGCTTTTGAACCAGCACTTTCTTCTGCCTGAACATTTAGTTCACCAAATTTACTAGGATTTGGTAGGTTATGTTCGGAAACGCCAAGCTTTAGAGTCAACAGTCTGTTTTGTTTAGTGATAACCTCAGACAAAAGACAGACAGCCTCCCCAAGAAATTGTTGCTCTTCCAGTTTAAGCATCTGTGTTGAATATCATATTAGAGTAAGTATTG

Explanation	CPC Score
noncoding	-1.00816

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0166500.4	2	18996671	G	A
Osa02LNT0166500.4	2	18995787	C	A
Osa02LNT0166500.4	2	18997823	A	C
Osa02LNT0166500.4	2	18996793	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0166500.4	osa-miR5534a	Cleavage	4.5	10.733	1	21
Osa02LNT0166500.4	osa-miR5797	Cleavage	5.0	15.3	1	21
Osa02LNT0166500.4	osa-miR169f.2	Cleavage	4.0	13.391	1	21
Osa02LNT0166500.4	osa-miR171d-5p	Translation	5.0	16.942	1	21
Osa02LNT0166500.4	osa-miR171e-5p	Translation	4.0	16.942	1	21
Osa02LNT0166500.4	osa-miR390-5p	Translation	4.0	16.236	1	21
Osa02LNT0166500.4	osa-miR444b.1	Translation	5.0	13.622	1	21
Osa02LNT0166500.4	osa-miR444c.1	Translation	5.0	13.622	1	21
Osa02LNT0166500.4	osa-miR1428e-3p	Translation	4.5	15.372	1	21
Osa02LNT0166500.4	osa-miR1865-5p	Translation	4.5	20.541	1	24
Osa02LNT0166500.4	osa-miR1869	Cleavage	5.0	10.733	1	24
Osa02LNT0166500.4	osa-miR1869	Translation	5.0	13.391	1	24
Osa02LNT0166500.4	osa-miR2055	Translation	4.5	16.193	1	21
Osa02LNT0166500.4	osa-miR2093-5p	Cleavage	5.0	13.619	1	20
Osa02LNT0166500.4	osa-miR5154	Cleavage	5.0	19.336	1	24
Osa02LNT0166500.4	osa-miR5484	Translation	5.0	23.214	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0166500.4	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0166500.4	2	nan	Morphological trait	Root	RG171	RG157
Osa02LNT0166500.4	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0166500.4	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0166500.4	2	2-3SY	Physiological trait	Source activity	RG171	RG157

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus