>Osa02LNT0166900.1

GAGAAAACCACACAACAACAATTTCCATTCAAAAACAGCAGGGTGAATGAATGGAAAACAAAAAGCATAACCATACTACTGCTGCTACTGCTACTTCTTAATGCCATAGTGCGCATATTCAGGAGTTAACAAGCCTCCTGAATATCAAATAACTATAGCAATGTTCATAGTGAACTATAGTTTTTAGGTAGATAAAACATCAGGTCCTACTCTCCCAAGCTGCGTTTGATCTACGAATTCATATTTCCTCTCTGTTGCTGAAGAGCAGGGTCATCGATAACACACTTGTCCAGCTGCAGATCTCCATCATCCAGTGCCTGAAAATCGAGCTCCCAGAATTTTTCAGGCTTATTAGCCATCTCCATCAGATAGGGATCACTAACAAGACTACCATATGCTTGCTGACTAGTGCCACTGCAAGAACTTTGTAAAGCCGACGAAGCATCGACGCCCCAAATTCGCTCGTCATCATCTGCATCCATCAATTTACCCGCTGTTTGTAACATGGAGTCAGAAAGCATCCCCATATTGTCAGAAAATGATCCGAGGCAATCAGCTTCAGAAGAGGTAGCATCCAATCCTGGAGACAATACATTCTTTCCCTTGGATCTGCCAATCGTGGGATCTTGGCCACGAGGACCAGAAGCTGGAGGTATTTCCAGTAGCTCAACTCCGCTACCAAGCTCAAGTTCCTCCTGTGTGTCAAATCCCTGAACCAACGCCCCGATGTCGTCTGGTGCTTCGATTCCATCAAGTCCTATGTTCTCTGGCAGCATGGCAAGATTGAGGTCCCCATCTTCCAAAAGAAAATTCTGAAGGTCTAAGATGTCACTGTGCGTGGCTGGAAGGTCCAGGGACGTAGGGGAGAAATCTAAATTGCTCTCTCCAGTGTGTTGTGAGCTGGACTCACCTGAGTCAATGTTGCCATGTGGTACATGCTTGAGGAATTTCCTTTTCACTCTGGTGGAGTCGATTTCCTTTTGCTGTCTGTGCATCTTAAGTTGCCTCAGGAAAGTTGGGTTCTGGAGGAGCTTGGCCAAGAAAGAGACCATCTGTTTCTGCCGATCTTCCGCTGATTCTAGCCTCTGATTCAGCGTGCTCATTTGTTCAATTGTCTGAAGGTGCTCTTGCTTCAGCCTGGTCACCTCCTGAAGCAATGCACTCTTCTCCCTTCTCAGTGTGTTGAGTTCAGGGTCTAAACCGGATTCACCAGAAGAGCCAGGCTGAAGACCACTTTGTTGTGTTGGTGAGGACCTGCGCCGGACAATCTTCTTCAACAAATGTTTGCTATGTCGTAGGAAATCCTCATGAGCAAACTCCCATCTATCAGCATGAACCTTGCGAAAACCCTTTCAATTACGAGAGCGGCGAATTCCAGCAAACGGATTAAGCTTGCCCATCACAGGATCTATTCCTCAGGATTGTTTCGCTCATCATCTTAATCCAGTTATCCATTTTCGAGTTACATTTCAAGATTCCGCACACAAAAGAAAAGGAGCAGTACAAACTCCACATACATGTTCAATTTACAAGATACTATCCAACACCAAGAGGGGGAAAAAACCCAAAAGAACACGAGAGAGAGAAAAAAAAACAAGTTGCAAATCAGCAGCATCTTCATCCGCATTCTACAGCTCATGAGTAATCAAAACAGAGTAACAATGGAAAACAGAGTACATCCATCACGAGCAGATCGCAAGAACGCTGGTATGGAACGGGAGATGGGGAAGGGGCGGGGATTTTGATACGCACATAGGTGTTGAGCTGCCGGACGAAGCTGGAGAAGTTGTTGTGCTTGAAGTGGTGGGGGAGCACGTCGCGCGCGAAGGCGGAGGGGTCCCAGACGACGAAGCTGTTGCCGGCGTGGCCCCAGGAGATGACCCCGTCCAGCTCCGGCTCGCACACCAGGTCGTACGTCTTGGACAGGAACGGCGGCAGCTGCGGCCCCTGCAGCAGCGCCTCCAGCGGCCGCGGCGGCTGCATCAGCTGGTCCAGCGGAGAGACGAACGGGGCCGGCTGCAGCGGCTCGCCGCCGCCGTCGTCGTCGTACCCCTCCAGCTTGGGCTCCAGCAGCAGCGCCGCCGCGGCGTCCACCATGGTGGTCGGAGGAGGGTCGGTGTTGTGGTCCATTGTGGAGGAGGAGGTGGTGGTGGCGCGGAATTTATAGGCTTCGGGTTCGAAACCGACATACTGTGCGAGGGCGACGGGC

Explanation	CPC Score
noncoding (weak)	-0.569359

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0166900.1	2	19309854	G	T
Osa02LNT0166900.1	2	19311325	A	G
Osa02LNT0166900.1	2	19312383	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0166900.1	osa-miR1440b	Cleavage	4.5	11.461	1	21
Osa02LNT0166900.1	osa-miR6246	Translation	5.0	13.305	1	23
Osa02LNT0166900.1	osa-miR166b-5p	Cleavage	4.5	20.896	1	21
Osa02LNT0166900.1	osa-miR419	Translation	4.5	10.76	1	21
Osa02LNT0166900.1	osa-miR814a	Cleavage	4.0	21.581	1	22
Osa02LNT0166900.1	osa-miR814b	Cleavage	4.0	21.581	1	22
Osa02LNT0166900.1	osa-miR814c	Cleavage	4.0	21.581	1	22
Osa02LNT0166900.1	osa-miR1860-3p	Cleavage	4.0	17.111	1	22
Osa02LNT0166900.1	osa-miR5144-3p	Translation	5.0	20.819	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0166900.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0166900.1	2	nan	Morphological trait	Root	RG171	RG157
Osa02LNT0166900.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0166900.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0166900.1	2	2-3SY	Physiological trait	Source activity	RG171	RG157

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus