>Osa02LNT0167000.1

GATTCAAGCATCACAAGATGTACAGAAGTGCAGAACTATGTATAACTGGCAGTTCGAACGGTACCAACAAATATACGGGGTTCATGGTTTCGTCGCCGTTCGACAGCCATAGATAATTACAAATAAACGTTTCTTTCCCTCACAAACTAAAACTACAAATTGGGAGCGCAAAGCACAAAAGCAAGCTGTCTAGTCTATCCGGCATTCATCGAAGCAGAACCTAGGAAAGCCGTTCACAGATTGCTGGCAACTAGTTTTTCTTGCTCCTTCGCACTAGCAGCCGCACACACTTGCATGCTGCCTCTTGGTGTTCTCATTCCGCTGGAGCATAGACAACGCAGGTTCTGCTAGGAGAATAAACTGAGAACGAGTAGGGCCTGTTGTCATGTGAACAATCGGCAGTGAAGTGCTCTGCAGTGTGATGGATCCTGCCAAATCCACCAAAGAGTCCAGCATCTGAGTCCAAGACCACCTTATATTTCCCTGGCTTTAAACAACCAACACGGTAGTCAAAATAGCTGTTACTCCAATGGAAGTTGAACACAAATACCAGATCTCCCTTCTCAAATATAATCATCTTATCCTCTTCATGCTTTCGAGATATGTACTGGTGGTCTGATGTCATGAACCCATATTTTTCCTCGAGAGACTGCATCGCGCGGTCAAACTCTAGCATGCCACGATACCTAAGATAGTCCGCATCACCCAGGTCAAATCTTCGACGGCATTTATCATAACTGTTGTTATTCCCTGGGATGAATTTACCATTTGGAAGTACTTGTGGAGCTCTTGGAAAATCAATCCATTCAGGATGTCCGAACTCATTTCCCATAAAGTTAAGATAGCCTTCTCCTCCTAACCCCATTGTGATAAGTCTAATCATTTTATGCAATGCTATTCCACGATCAATGCTAGGTGTTGCCGGTCTGTCCAGAGCCATAAAATCATACATATCCTTGTCCATCAACCAGAATGCAATAGTTTTGTCACCAACTAGTGCTTGATCATGACTTTCAGCATAAGTAACACACTTCTCTGACCACCTTCTGTTAGTCAGTGTGTGCACAATATCACCCATCTTCCAAGATTCATCACTTTGCTTGAGGAGTTCAATCCATTTGTCAGGAACAGCCATATGAAGGCGATAATCAAAACCAACCCCACCATCTTGAACAGGAAGGGCAAATGTAGGCATTCCACTGACATCTTCACCGATGGTTATGGCCTCAGGATAAAGTCCATGAATTAAATCATTTACCAGCATCAAGTAAACTACTGCATCAGCATCAGTGGCAAATCCAAAGTATTCACTGTAGTTCCCCGTAAATGCTACTTGTAATCCATGATGAGTGTACATCATTGAGGTTACACCGTCAAATCTGAAACCATCAAACTTATACTCCTCGAGCCACCATCTTGCATTGGATAGTAGAAATCTTAGAACTTCCCAATTCCCATAGTTGAAAAGGCGAGAATCCCACATCCAATGATGGCCGCGTGAACCACTATGAAAGTAATGCGTATCTGTACCATCAAAACCGTTCAACCCATCTAGGGTATTATTTGACGCATGGCTGTGAACAACATCCATGAGCACAACTAAACCAAGCTCATGAGCTTTATCAATCAATGACTTTAAATCTTCTGGGGTCCCGAAACGACTACTTGGTGCAAAGAAATTGGTGACATGGTACCCAAAGCTTCCATAATATGCATGCTCTTGAATTGCCATTATTTGCACTGCATTGTATCCAAGCTTTTTGATTCTTGGAAGCACCTCATCCCTAAAGTTTGCATACGTGTTGATCTTTGGCTCCGTGCTACTCATTCCAACATGAGTTTCGTATATCCGCAATGACTTTGGTCTTTTAGGTTGAGGATGCTTGAATATGTACTTCTCCTCTTCAGGAGGATCATAATATATTCCATTGTATGGGATTTCTCCTGCGGCCTGCACAGAGTACTTGATCCAGGCAGGAATAGAATCCTTTATACCAGATGGAGTTTCCATTCGCACCTTTACACGTGAGCCATGTGGAATAGGAGATGAGCCATCAGCATTGTTAGGCAGAAAAATCTCCCAAACACCAAACTCATTTTTGCTCATGCGGTCTGCATTTGGATTCCAATTGTTGAAGTCACCTACTAATGCTGCAGAATGTGCCCCGGGAGCCCATTCTCGATAAGTGACACCTTCAGCACTGTGATTAAATCCAAACTTCTCATAACCGCGAGAAAATGTTTCCAGTCCTCCTTCATACTGATCAATGTCTGAACGCAGTCTCCTATATAGGCTATATCGATATTCAAGATGGTACTTATAGCCATTAAGCATAGAGTCCATCTGGAATATTTTTTGCCCATCTCCTGTTGGTGGGACAACTCGTGGTTTCTGCTCAGCAGCTAATTCTTCAACCACTCTCTTCACGCCTTCAACGTCACTTGCTCCAGATGACTCAATCTCAACTTCAGCTCCAACCTCCGTGCTTAATTCATCATCTAAGGCTGGCAACTGCAGATCGTCTGAACCTGCTGAAACCGGCATCCCGTCGCTCTCGCCCTCGGGGATCATCACCTCCCCTGACGCGCCCGCCGCGCGCACGGCCACGCGCCCCCCGGAACCCCCCACGCGAACGGCACCGGGGAATCTCCGGCCGGAGAGCAGCGACCGCGACGTCGGGAGCTCCGCCGCCGCACGCCAGCTCCGGGCCCCGGCTGGCACGGGGAACCGCACGGCCCCCGCCCGTAGCCCCGCCGCGCTCCCGGGAACCGCAGACGCCGGCGCCGCCATCTCGCCCGCACCGCAGCCGGATCGGATCCCCCGGCAACCCCCGCGCTCTGCTTCCACCTAAACCCTCCTCACGCGAGAGCCAAAGCGAGGAGGCGCTGCCTGGTGGTCGGTGTGTGGGTGTGCGCGCGTGCGGGTGCACTGGTGCTGAAGCTAGGAGGAGCGGAGGGCGCCGCGCTATATAGAGGACGAGGAGGAGGAGCTCTGGTCCTGATGGAGCGAACCCCTCACGCGAGAGTGGCAGCGAGGCCGCCCGAGGGTGGGTGTGCGATGCGTGCACTGGGGGGACGGGGGCGGAAGAGGCGGTTGCGCGTCGGTCCAACCCGCGGCGCACGCGAGTCAGGCGGCGAGGGCGGAGGGCGAGGCTTTTCCCCTCCCCCCTCGCGGTGAAAGCGTCGGTTTCCCGTGCGCGCCCGGGCGTCGCGTTGCGTTGCGGGGGAAGGGAGAGGAGAGGAGCGCGTCCATGCCATGCCAGCCGCTGCTGCCAGGTGGAAGGTGGAGGGCAGCGGCGCGCGCGCGCGCGGGGAGGCAGGCGGAGTCACCACCGATCGAGTTGGCGTGGCGCGGGCCGTGCGGCACGGCGCGGGTTGGGGAGGAAGAGGAGAGGAAAAGGAAACCAACGGCGGGGAGGCTTTCCCTCTCGACCCGTAACGCCGCTTGCGTCGCGTCTCCCTCCCTGCTACTTGCTACTCCTG

Explanation	CPC Score
noncoding	-1.16688

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0167000.1	2	19356777	A	T
Osa02LNT0167000.1	2	19356279	G	C
Osa02LNT0167000.1	2	19357467	C	T
Osa02LNT0167000.1	2	19359240	A	T
Osa02LNT0167000.1	2	19356429	G	C
Osa02LNT0167000.1	2	19359241	T	A
Osa02LNT0167000.1	2	19360026	G	A
Osa02LNT0167000.1	2	19360640	G	A
Osa02LNT0167000.1	2	19361118	G	A
Osa02LNT0167000.1	2	19364374	C	T
Osa02LNT0167000.1	2	19365124	T	G
Osa02LNT0167000.1	2	19365863	C	T
Osa02LNT0167000.1	2	19357654	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0167000.1	osa-miR419	Cleavage	4.0	16.621	1	21
Osa02LNT0167000.1	osa-miR1424	Cleavage	5.0	12.046	1	21
Osa02LNT0167000.1	osa-miR810b.1	Translation	5.0	21.232	1	21
Osa02LNT0167000.1	osa-miR810b.2	Translation	5.0	18.543	1	21
Osa02LNT0167000.1	osa-miR1849	Cleavage	5.0	18.35	1	21
Osa02LNT0167000.1	osa-miR2096-3p	Translation	5.0	19.131	1	21
Osa02LNT0167000.1	osa-miR2099-3p	Translation	4.5	10.773	1	20
Osa02LNT0167000.1	osa-miR2918	Cleavage	4.5	24.712	1	21
Osa02LNT0167000.1	osa-miR2918	Translation	5.0	24.975	1	21
Osa02LNT0167000.1	osa-miR5494	Cleavage	5.0	15.59	1	21
Osa02LNT0167000.1	osa-miR5524	Translation	5.0	22.086	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0167000.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0167000.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0167000.1	2	2-3SY	Physiological trait	Source activity	RG171	RG157
Osa02LNT0167000.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0167000.1	2	nan	Morphological trait	Root	RG171	RG157

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus