>Osa02LNT0167300.1

TTCACTGCTCCTGTGCACTGAACTACCTATACAAATATGCTGCTAAACGTTACAGATATGTACATCAGCTGCAGACCTTGATCAATGCAAATTGACTAACAGTTTACACAAAAATTTCAAGGTCGAAATAGTGCGCGCCTATCAATGGGTGTCAGAACCATCCAGTCCAGTTAGACGTTGCGCCACTTGATTTAATGGTTTAGTCAGATATATCCACCAATCAATTGGATGCTGATAAAAATGACCATCCAAGCAGACCAAAGGACCATGAAGGGATAGCATGAAAGCCAAGTATTTCCATCAGTCTGATTCAAGCTCCTTAAATCTCTTTTCCCATTCCTTGACTTCATAATCCTGATCCAAAAGATCCTTTTCGGTAGTGTAGACGATCTCCTCTGGAGTAATTACCTTACGTTGAGCCATGTCGCGTGCACTGAGTAACTTTCTTCTGAGAGAAGATTCTGGCAATGCAAGTTCCTGAGCTCGCTGTTCTCTGGCCTTGTTCCTCCTTTCAATGTCATTGTTGGTCTTGCGGAGTAGAAACCATCTAAACAACGGTATTGCAAAAAAGGAACCAGCATATACCTGAAGCAAAGGAAACAGTTGCGCAACAAATGAGATAAGTCCACCAGGTGGCACTGTCATTTGCTTCAACAGGTTCCCAAGAATGATCACACCAAAAAGATTGAGTCCTCCCAAACCAGCAACCATTGCCCTTTCAGATGCATTTGCTTTGCTGAATTTCCATGGTTTCTCCTCTAAGTACTTTTCAACACTGCTAAACATAGCAGACCATTTGTTACCAACATATTCTCTAACCCCACTTCCTTTTGATGAAGCAGTACGTTGCAGTGATGGAAACCTATAAAGAATGTTTCCCTGTTCATCAACTTCTGGGTGTCCCTGGAAGCGTAATAGAACTGGAAGAATAAATGATTCATCATCCTTGGATTGTTCTGAAATTGGTGGCACATCAAGATACGGTGCTAGTTCTTCTGCCGTGACAACTCCACCATTCGATGAAATATATTGCCCAATCATCTTCCACCTCTTATCTTCAAGACCATCATTTGGATCACCATCTCCAAATACAAATGAAAAGATAGATTCAATAAAATTCATCCCATCTTCCTTTTCTACCCGCCGCCGCCTCCTGTAGTAATCAGCGTCCAAGTACCAAAATAAATCTGTTGGTATGATGATAGTAGAGTCATAGGATCTCCGTCGCCTGCCGCGATTATCTTCATCACTCGAGCTTGAGATAATGGCAATGATGGTAGTGTATACAAGCACAATGGAGGCGATGAGCGCTGTCCCAAATGACACTCGCACCAAATATGCACCCACTTCCTTAGTTTTGTCGATCAGCGGCTCGACCTTCATTCTGAACGACTTGCCAGCAAGCTTCGCCCTGTAGTCTTTAGGGAAGACGTACAGCACCTCCCCTTCCTCCGAGACTTAGCAGAGCTAAGGAGGCGCACCTCCAGGAAGCCGCCGGTGTCAGCGGCGAGCGCTTGCAGCGCGCGCTCGGCCTGCGCGAGCTGCAGCCCCGCGCGGGACGCGACGTCGCCGATGGTGACGCGGCCGCCGAAGTGGTCGACGGCCTCCATGGCGCGGTCGCGCACGCCGGAGGGGAGGCGGTCGGTCTCCACGGCGCCGCCGGGGCGCGCGAGCCCCGGCGCCTGGATGGTCCCCGCGCGGGCCCTCACGTCGTGGCGCCACCGCGGCGACGGCGGGTGCGGGTGCCGGCCGTGGTGGTGGTGGGCGACGCGGAGGTGGAGGTGGAGGTGGTGGTGGTAGGGAGAGAGGGGGAGGAAAGGGGCGTGGCGCGGCGGCCTGCCGCGGCGGTGAGGCGGCGGGGGCGGGGCGAGGCGGAGGTGGAGGGAGAGGGAGGCGGCGGGCGCCATGGGTGGGGGGAGGTGGTGGTGGGGGTTTAGGGCGAGGTGGGCATTCTCCGGTGAGAGGAGTGGCTGTGGAAGGCGGAAGGGAAAGGGGGGAGAGAGGCGGTGGTGTGTGCTGGCCGTGGCCACGAGATCGG

Explanation	CPC Score
noncoding (weak)	-0.718469

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0167300.1	2	19624249	A	G
Osa02LNT0167300.1	2	19625624	C	A
Osa02LNT0167300.1	2	19627960	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0167300.1	osa-miR5533	Translation	4.5	13.691	1	21
Osa02LNT0167300.1	osa-miR5537	Cleavage	4.0	12.629	1	22
Osa02LNT0167300.1	osa-miR5537	Translation	5.0	17.886	1	22
Osa02LNT0167300.1	osa-miR413	Translation	5.0	20.828	1	21
Osa02LNT0167300.1	osa-miR815a	Cleavage	4.0	9.739	1	21
Osa02LNT0167300.1	osa-miR815b	Cleavage	4.0	9.739	1	21
Osa02LNT0167300.1	osa-miR815c	Cleavage	4.0	9.739	1	21
Osa02LNT0167300.1	osa-miR444b.1	Cleavage	5.0	21.185	1	21
Osa02LNT0167300.1	osa-miR444c.1	Cleavage	5.0	21.185	1	21
Osa02LNT0167300.1	osa-miR5521	Cleavage	3.5	12.096	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0167300.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0167300.1	2	nan	Morphological trait	Root	RG171	RG157
Osa02LNT0167300.1	2	np2.2	Morphological trait	Culm/leaf	RM324	RM262
Osa02LNT0167300.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0167300.1	2	2-3SY	Physiological trait	Source activity	RG171	RG157

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus