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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0167600.1

GTGAACATTCTTGCTCTTCATCATCTATTGAATTGAAAAGGCTGTTAATTACAAAAATAACCAATAGCAATTAAAATGCAAAACATATTTTGCATTTTTATTCAAATTAACGCCGCGACACAGTGTAAAACATATTGTTTTGAAGCACCAAACCAAGCTACAGAAGTAGGACTGAATTATTTATTACATAAATAATTATGACCTGAACATTATGTAGAACTTGATCTCTGTTCAACTTGTACACATCCTGAAAAAAATGTTGCTTGGATTCAGAGCATGATAACATCAAGCCATCTTAATGGTGAGCAGATGACAGAATTCTGATGGCGTCTTTGCCTCTTTGGTTTAAATAAGTGAATCACAAATTTCCTTTCATCAGTCATAAACAGTTGTCTACTACTGAATCATCTTCTAAGACCAAGCTTCACTTTCATCCTCTTCTCATCCCACATGGAAGGATCATTCAGCTTGCTCAATTCCATGATCTATTCGCTAGGCCCGCAAGAAACAATAATCTTGTGACTCCATGATTTCACTTATGTCTCTGGTATGCTGATGCAGAGGTGCACATCTCAGTATTAGTGCTTATACACAACTTCAAAAAGAAAATCTTGATTGACGCGGCGACGATGGCTGTCGGCACCGGTTTCCCGTGCGGGAACCAACACGGCGCCGGCGGGGGCAGGCCGTGGTGGAATGCTGCGGCGGCGGCAGCGGCCGCGGGAACAAGAGATGAGGCGCAGAGCGAGGAGGCGCGCCGCGAGGAGTAGTGCGGGGGCAGAGCGATTAGCGCGTGCGGACGGGAGGAGAGAGCGATTAGCGGATTGAGGAGGCGCGCTGCGCATAATAGCGTGGGGGCAGAGCGATT

Coding Potentia
Explanation CPC Score
noncoding -1.173
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0167600.1 2 20631341 A T
Osa02LNT0167600.1 2 20632000 C T
Osa02LNT0167600.1 2 20632279 C A
Osa02LNT0167600.1 2 20632948 G A
Osa02LNT0167600.1 2 20633424 T C
Osa02LNT0167600.1 2 20631876 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0167600.1 osa-miR1858a Translation 5.0 10.168 1 21
Osa02LNT0167600.1 osa-miR1858b Translation 5.0 10.168 1 21
Osa02LNT0167600.1 osa-miR2103 Cleavage 5.0 16.554 1 22
Osa02LNT0167600.1 osa-miR2863b Cleavage 3.0 14.658 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0167600.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0167600.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0167600.1 2 2-3SY Physiological trait Source activity RG171 RG157
Osa02LNT0167600.1 2 qRTH-2 Morphological trait Root RM262 RM341
Osa02LNT0167600.1 2 qSTA-2 Morphological trait Root RM262 RM341
Osa02LNT0167600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0167600.1 2 nan Morphological trait Root RG171 RG157
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus