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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0168300.1

GGACAGCCAGCAGGCCAGCCACGTGTACACATAACTAACCATATCTCCTGTTCGTCAATGCCAGAGAGGGATCGAGGAGAAAGTGACCAAATCTGAATCATAATAATACGGGTTAAGATATCGCTGGATGAGATCCTGTCGATTGCATCTCGCAATCGATCTACAGCCTGCTGCTGTCCCTCTCAATATCCAAGATTTTGCAGGGATGTCACTTCAGGCTCCATGTATTTCTTCTTCTTTTTTTTCATTTGATTTTTTTTCTCAGCTGGTGTGTGCTTGTGTGTGTTCTTTTCTCTCTTGTCGGTGGAATATTTTGGCAATGAGAACACACTATATTCAGGTCAGATTTGATTCTCTGAAAATCTGAACAAAGAGAAAAGAATGTAGGGCATGAATGTACAGGCGGGGTGAAGTTGATGTGTGCATTTTCTCAATTCACTTGATATATTTTGTTGCCTGCTTTCTAGCAAGCAACCAATGATCTAAGATAATGAAGCTTTTAAAAGATTTTTTTCGATATGTTTAAAAGTTGCACTAAGTTGGCCAGTTGATATGAGGGGAACTAAAGTTGATCAGTTGAAAAGAAAGAAAAGGACACCAAAGAAAAAGCTTTAGATCTTACCATTTGACCTAAGGAACACTTCTAAAGATTTCTGATTGACCCTTGTTTAACAAATGTGCATCTACTCATCTCAGAAATCTTATCTTTCGGTAAGCGCAAACCTTTGCATTCATTCAACCACAAAAATCACATGGCTGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.891104
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0168300.1 osa-miR5541 Translation 4.0 12.61 1 21
Osa02LNT0168300.1 osa-miR5807 Cleavage 3.5 15.288 1 24
Osa02LNT0168300.1 osa-miR1866-3p Cleavage 4.5 18.74 1 22
Osa02LNT0168300.1 osa-miR5521 Cleavage 5.0 15.693 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0168300.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0168300.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0168300.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0168300.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0168300.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0168300.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0168300.1 2 qRTH-2 Morphological trait Root RM262 RM341
Osa02LNT0168300.1 2 qSTA-2 Morphological trait Root RM262 RM341
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus