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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0169300.1

GGAAGTTCTTGGGAATGCATCATGCAATCCTTGGTTCTATGCAAGCTTTTGAAGGACCTTAAAATTACACCATGACACGACAAAGAATAACTTAATTCATTACACCAGTTAGCAAAATACCCCCTCTATATGTAATATACCCTGTGGTACCAATGGATCAGTGTTTTACAAAAAATCATGCCGAATTGGTGCTCCTCCAAGTTGCATGGCTTCTTAAAACATACACTGCCTGATGTGAAAACACAGGAAACCATGCAAAGTTTGTGTGGTTTTTTTTCCCCTGTCTGCCTAGAGCAGAACTCCCATACAATCTGATCAGGCAGGTGGTGGCTCTGCAGGCCCAGCTGGTTTTGTATTCAGAAGAGGCTGGATTGCCTTCACGACGATCGTCATGTTCGGTCGGAAGTCGGCTTCGTACTGAACGCACAATGCTGCAACTGCTGCTAGCTTTGCGACAGCCTTCGGAGGGTAATCATTGTTGAGCTTTGGATCGACGCACTGCTTAACTTTATCTTCGCTCAATCTTGGAGTAGCCCAAGTGACAAGACTTTGTTGCCCTTTTGGCATGGTGTGATCAACTGGTTTCCTTCCGGTTAGTAGCTCCAATAGAATCACGCCAAAGCTGTAAACATCGCTCTTCTGATTTATTTGCCCTGTCATGGCATATTCTGGAGCATGGTATCCAAATGTTCCTAGCACCCTAGTCGAATGCAACCGGGCAGCGGTGTCGGTGCCCTGGTTCGTCAGGTTGAAATCGGCGATCTTCGAGCTGAACTCGTCGAATATAAGAACATTGCTAGACCGAACATCTCGATGAACGATCGATGGCTGCACTTTCTCATGGAGGTACTCCAGCCCTCTCGCCGCCCCATAAGCTATCTTGACCCGTTGCGCCCAGTTCAGAACCGGGCCGGGCTCCGCGCCCTGGACTCCCTTCTTACCGTGAAGAATGTTGTGTAAAGAACCCATGGTTGCAAACTGGTAGGCCAGCATGCGGTTGCCGTCTTCCAAGCAGTAGCCCAAGAGCTCCAGGAAGTACTCGTTCTTGAGCTTGGACACCATCGCTATCTGGGCGGAGAACTCGGAGTCGGTCTCCTGGGAGGCGCCGGGGTCGAGCTTCTTGATGACGGCGGCGCGGCCGTCGCTGAGCGTGCCGTTGTAGACGCGGCCGTAGGAGCCCTCGCCGATGAGGGCGCGGTCGCTGAAGTTGCTGGTGATCTTCTTCAGCTCCTCGAACGGTATCGCCGGCACGTCGATGTTCACCGGCTTCGGCGGCCCGCCCGGCCGCGCCGCCCCCGGCCCTCTCGGCCCGCCTCTATTCCCGGGAGCATTGACGTTGGGCGGCGGAGCGGCCTGGTTCGCCGGCGGGCCGTAGCTGTCCTCCTCGGCGCCTCCGCAGCAAGACATCTTCTTCTTCCTCCTCCTCCTCTCGCCGGAGTTGGATGCGCGGGCTGATCTGGTGGCCGCCCCCCGCTCAGCGGATCATCGCGCACGACCTCCCCCAAAGATTCCCGCACGAGATCGATCGCTTCCCGCACGAGATCGATCGATGGCGATCGATCGAGGGGGGGCAAAGGGAAGAACAGCGGTGTTTTGTTCCCCGGGAGAAGAGGTTAATGGTGGGGAATGGCGGGAGCTCCCCCTCTTTCCGCGCCAAAGGAGCCAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.885418
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0169300.1 2 21475461 G A
Osa02LNT0169300.1 2 21476579 G A
Osa02LNT0169300.1 2 21477243 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0169300.1 osa-miR5835 Cleavage 5.0 23.434 1 24
Osa02LNT0169300.1 osa-miR160a-3p Cleavage 4.5 19.374 1 21
Osa02LNT0169300.1 osa-miR160b-3p Cleavage 4.5 19.374 1 21
Osa02LNT0169300.1 osa-miR160c-3p Cleavage 4.5 19.374 1 21
Osa02LNT0169300.1 osa-miR160d-3p Cleavage 5.0 19.374 1 21
Osa02LNT0169300.1 osa-miR171b Cleavage 4.5 21.3 1 21
Osa02LNT0169300.1 osa-miR171c-3p Cleavage 4.5 21.3 1 21
Osa02LNT0169300.1 osa-miR171d-3p Cleavage 4.5 21.3 1 21
Osa02LNT0169300.1 osa-miR171e-3p Cleavage 4.5 21.3 1 21
Osa02LNT0169300.1 osa-miR171f-3p Cleavage 4.5 21.3 1 21
Osa02LNT0169300.1 osa-miR2928 Translation 4.0 19.638 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0169300.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0169300.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0169300.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0169300.1 2 np2.2 Morphological trait Culm/leaf RM324 RM262
Osa02LNT0169300.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0169300.1 2 qRTH-2 Morphological trait Root RM262 RM341
Osa02LNT0169300.1 2 qSTA-2 Morphological trait Root RM262 RM341
Osa02LNT0169300.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus