\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0169600.1

CACCCCTTAACTCTTCGCTTTGTGCAACATACACCCTCGAACTTTAAAACCGGGTATTTAACACCCCTAAACTTTCAATACCGTTTATTTTAACCCCCCCTCCCTCAAGCGGTTTTTGGCTAGTTTTCGCCTACGTGGCGCTGATGTGGCAGTCCAGTCAGCAAAAATAAAAATAAAAATAAAAATAGGGCCACATGTCAGAGGCAAGCTACCTATTCTTCTTCCTCCCTTCTCTGCCATTTCTCTCCTTCCTCTTTCTTGCTCTATCCCTCTTCCTCCCAGACCAGGAGGGCAACGATGGTGGTATCCCTGAGCTCAAGGGCTAGTTTCAGCGAGGGAGCTAGCTCCTCCTTGACCCCAAAAGTTCCCATGCATCATGTGGCTTCAACATCACCTCTTTGTCAACCGCTGATGCCTTGTGCTCTTCTCCTCCCCGAGAGCTACTGCCACTGCCTGACAAGTGATTGAAGGGGAGAGAACAAAAGAGAAGTGGTGGGAGTGAGGAGCTCTGCATCGACCACCTAGGAGAGATGAGACTAACTGGATCCCCTTCGCTACCGCCCAGAGCCCCAGATCTGACCGATTTTTTTTTTTTTGACAGGGATCTGACCGAATCTTGAGTGAAGCTCGACACATCCACCACCTAGGAGAGATGCGGAGCTCGGCGCTGAGCCGCCGACACCACCATCGACTGCCTTGCTCCTCCTTCTCAGACTCCTATCTTCGTAAGCACACCCTTCTCCGAGCAGCCGGTGGCCACCACCATGCCCCTCCCTTGGCGATGTCGGAGAAGATGGGGTCCCTAGGGCGGCCTCGAGCTCACGATGAGCTCCACCGTCGTGCCATCCCCTCTCTTGCCTCTTCCTCCTCTCTCCAATTGCTCTCTCATCGCCAGTGGCTGCCTGTAGGCGCGATTCCGTCGGCGGCGGCTGGGAGAGATGGAGGAGGAAGATAAAGCCAAGCTGGCCTACGGGTCCCACATTTTTTTTCTAGCTGAATTTCCACGTAAGTGCCATGTGTGCAAAAACCACCATGGTTTCTGATAGGGGTGTAAGTTAGAC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.950406
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa02LNT0169600.1 DTM_#DNAt_MULE_japo_Os1617 Chr2 . 21864316 21865491 1060
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0169600.1 osa-miR169n Cleavage 5.0 15.905 1 21
Osa02LNT0169600.1 osa-miR169o Cleavage 5.0 15.905 1 21
Osa02LNT0169600.1 osa-miR435 Translation 4.5 10.353 1 20
Osa02LNT0169600.1 osa-miR3979-3p Cleavage 5.0 22.637 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0169600.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0169600.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0169600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0169600.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0169600.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0169600.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0169600.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus