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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0171200.1

ACAAATAGTTTTGAGTTCATATATCAATCATGGGAGCAATGAATAAACTCGGGTGGTATAAGCACACTCTGCCGAGCTCCTCTGCAAAACAAGCACGCAGCACGCCCAAGCATGCGCTATGCTGTTAGGCCTTCCAACTACACAGTACAAAATCATGAACTCAAACCAACCACCAATTGGTCGCTCAACTAAGCTAGTCAATCGTATCAGCTACACGCTGTGGCGCGATGTTCCTCCAAAGGGGCATTGTGCATCAGATCATAATGCAAATCATCATCCCTAGCCACTTTCTCGCATGCAGTTGCCCGGAAGAAGATAGCGGTACTGGTCCATTTTCTCCAACAGATAAGCAGGAAGGTGAACAGCTGAAAATGTGCTAGGGATTGGCCCCAACTTGGCAATGATCTCTTGGAATGTATACTCTTCGGGAAGCATGTCAAAAAGATCAGCTCCTTGGCATATCACATGCTGAATCCTTTTGGGGTTCAAGAAGTACTTAAATCTAATCCGGTCAACATGGCTGTAAGCTTGCATTTTGAAGACAAAATCATTTATGTGCCGGAAGCAAAAGCTGCAGTGCCACCCTGAGTCGGCCAGAAGGTCGTCTGTTTGCCGGAAATGCGCATACCTCGTCTTTCCAGCCCGGTATCTGTGTATTGAAGCCCTCCAACTCTTGTCGTCAAGGAGAAACTGAAATGAGTAAAGATAGTTCCTGAGCTGGAGATGAAGCACTTCAGGAGTGTCATCACACCACCTCAAGAGGTTGATTGTATGGCCACTGGGGATCTCATCAACATCAGACATGATCAAAAGGTCATCATCTGTGATTCCAGCAATTTTGATAAGCTGGTCAAGAGCAACCCTTTGATATGACTCCTCGACAAATGGGTTCTCCCCCTTCACAAATCTTCCACCTATCATACCATAGGTCAACCGTGATTCAGCAAATTCAAAGCGTTGACGGTTTTCCTTGAAGTGGAGATCCTTTTTCAGGCCAGTGAAGGTTGAGTTGGACTCGAGCAGCACAAATTCTGACACATATGGGCTAAGCTCATGCCAACGGATATCAAGAATGTCAAGCTCATTGCTGAAAAGCACAGCATCAAAAACACGGCGTGGAGTTTCCCTGACTTTCCATCCATGCAACTTGCATAGGTTTGCCATCGAGACATTTTCATGATAGTAGTGAGGAAGCACATTGAAGGGCTTTGGCGGTTTTTCCCAGATCGGTCGAAGAAAGTAAGTCACCTTGACATGCTCAGAATTGCCTTTGAACCATGCTCGCTGCCGCCGCAGACGCCCCCGCAGATGCCGCCGTCGTTCTTCTTGCAGTTGTAGTAGCCCGCCGCCTCCATCGCGTCGGCAAACGCGCGGAGCAGCAAAGGTGGGGACGCGCTGCTCGCCGCCAATGGCGACGCGTGCGTGCGTGCGCCCGCCCGCCGATCGGCCGACGCAGCCTAGCCCGGAACACCACCAGCACCGCCGCCGGCGATCGCAAAGCAGTTCACACGTCCCCCGCGCCTCCGACCCCGGAGATAGCACTACTCTTCTCGCGTGCGCCGGCGAGGGGTGTCGGGATTACGGCGGTGAGGGGGGTGGGAAACGGAAAGGGGAGGGGGGAGGTTGATGTGGTGGTGGT

Coding Potentia
Explanation CPC Score
noncoding -1.0637
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0171200.1 2 23071509 G A
Osa02LNT0171200.1 2 23071905 T G
Osa02LNT0171200.1 2 23072076 T C
Osa02LNT0171200.1 2 23071471 T C
Osa02LNT0171200.1 2 23071428 A C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0171200.1 osa-miR5805 Cleavage 4.5 19.653 1 24
Osa02LNT0171200.1 osa-miR160e-3p Translation 4.5 22.552 1 21
Osa02LNT0171200.1 osa-miR1848 Cleavage 1.5 24.62 1 21
Osa02LNT0171200.1 osa-miR2863a Cleavage 5.0 16.373 1 21
Osa02LNT0171200.1 osa-miR2926 Translation 4.5 23.28 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0171200.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0171200.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0171200.1 2 qPN2 Morphological trait Culm/leaf RZ961 RZ401
Osa02LNT0171200.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0171200.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0171200.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0171200.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
Osa02LNT0171200.1 2 Tiller number Morphological trait Culm/leaf R26 C424
Osa02LNT0171200.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus