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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0171300.1

GGGGAATAATCAAATGTGTTGGTTTAGAAAGTGATACCTTTGAGGTTCCATGAATCGAGTCGATACTTCGAGCGGCCTCCATCGCCCTTAGATTTATCAACATTAAAAGAACAAATACACATAATCAGAGCAGTTGATCTCCCCGAATTCAATCAGTGTCCCACGACAAAATCGACAATATTCAAGAGCACAATCAAAGAAACAATATACAAGAACAAAATTGACATCCACAGATCAACACAAAGTCTAAAAACGCAGCTAAGACATGGTGAAGTCCGCCGTCAAACCGATGCATCGTCCAAATCCGACTGACCCCAGATCCAACGATCGATGAGCTCTAGGCGGTTGGATCTGGTGTTCCTCGATCTCCAGATGGCTGCCACCACTACATGCCATCACCTCGCCGCCAAGCCCCTTCGTCTTTCCTACAACGGCATAGGGACTTCCGTTGTTGAGTCGACAAGCTCCCCCTATCCCCACTGAGCCGACTATCTCCTCCACCGCTATGAAACCACATGTGTAGCGCCTTCTTCCCTAACCTCAATGAGCTCCACCATTGAGCCGATGCCGTTGCTCCTAAGCGCTTTCCAGCGGTTGCTTCGTCGAGGGCTCTGGCCCAAAATGCTCCCCTTCGTGTAGATATAGCTGGTCATTTCCAAACCATATCATCGACGAGTTTGCTGGATTTTAAATAATGTAGGAGGAATGAAGTAGATTGGATGGAGGGGATGACGACAACAATGGCTATGACAAGGGAAGAGAGGGTCGATTACGAGTTTATGATGGTGAACAAATAATAGAGAGGGCTCCGGCAACCAAGGGGAGAGGGTTACGGCTACAATCGTGGCATGCGAGAG

Coding Potentia
Explanation CPC Score
noncoding -1.24425
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0171300.1 2 23093224 A G
Osa02LNT0171300.1 2 23092775 T C
Osa02LNT0171300.1 2 23093084 A G
Osa02LNT0171300.1 2 23093111 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0171300.1 osa-miR5531 Cleavage 4.5 23.843 1 22
Osa02LNT0171300.1 osa-miR5833 Cleavage 4.5 24.808 1 21
Osa02LNT0171300.1 osa-miR395u Cleavage 4.5 21.26 1 21
Osa02LNT0171300.1 osa-miR2866 Translation 5.0 13.692 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0171300.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
Osa02LNT0171300.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0171300.1 2 Tiller number Morphological trait Culm/leaf R26 C424
Osa02LNT0171300.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0171300.1 2 qPN2 Morphological trait Culm/leaf RZ961 RZ401
Osa02LNT0171300.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0171300.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0171300.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0171300.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus