>Osa02LNT0171700.1

CTCAAATTTTTCGAGTTAATTTCAGTTCTTTGAAATCTGGCGTTACAGTAGGAAATCAAGGACTACAGGTTCATGTTTCATAATCAGTGGAAGGAATATAACTCACGATCTAAACACTGGGAATGTAATGTATCTATGAAGTTGTACAGCGGAGCCACGTACTTGTCCAACATGCTCAGGAAACAGTAAAATCTCAAACAAGAATGACTAATCTGAAGCATCACTGCGCTTTCTTCTTAGCATCTTTGGCTTGCCCCTTCTTGCGGATCTTGATGCACATTCCCAGGCGAATGCTGTCAATGAGTGACTCGGGGAGAATGGAGATCAGGAACCACATTACAGAGTGTGGCCAGTACGGTGTGCACCTCGGCTCATAGCCTATGTGACGAATGGCAGCACGGGCGTAGGTGTCCGCGGATGGGACAAAGAACGAGGATTTCCTGATAGAGGCCATCTTTGTTGCCACATACAAGGGCACCTGGCATTGCACATCAATACCCTTGCTCTTGTACTCAACATAAAGGCATCTTGAGAATTGGTCAACGTAAGCTTTGGTGGCGGCGTAGACGGAGTAGAGCGGATCGGACGGCATGACGGAGGAGGAGCCGGAGCCGATGTTGACGATGGCGCCGCGCTTCCTCTCCACCATGGCCGGGAGCACGGCGTGCGTGACCCGCGTGAGGCCCTCGACGTTGACCCGGATCAGGGTGCGCATGAGCTCCTCGTCCACCTCGTGGAGGTAGCGGGCGTACGGGTACGAGACACCGGCGTTGTTGACGAGCACGCCCACCTCGAGCCCACGGATGGCCTCCCTGAGCCCCTCCACCCCGGCGGCGAGGCCGTCGGCGGCGAAGTCGAGCACGAACGTCCGCACCTCCACCCTGGGGTACCTCCCCCTGATCTCCTCGGAGACCGAGGCCAGCTTGTCGGGGCTCCGGCCGACGAGGACGAGGCCGAGCCCCGAGGCGGCGAGGCGGAACGCCATGGCGCGGCCGATGCCGTCGGTGGCGCCCGTGACGACCGCCCAGGCGCCGTAGCGGCGGCGCAGGGGCTTCCCCGGGCGGAGGAACGCGGCGTAGAGCCAGAGCGCG

Explanation	CPC Score
noncoding (weak)	-0.879955

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0171700.1	2	23242208	G	A
Osa02LNT0171700.1	2	23242216	A	G
Osa02LNT0171700.1	2	23243614	G	A
Osa02LNT0171700.1	2	23244186	A	C
Osa02LNT0171700.1	2	23244273	A	G
Osa02LNT0171700.1	2	23243024	A	C
Osa02LNT0171700.1	2	23243138	T	A
Osa02LNT0171700.1	2	23243215	A	G
Osa02LNT0171700.1	2	23243290	T	C
Osa02LNT0171700.1	2	23241825	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0171700.1	osa-miR528-5p	Cleavage	4.5	17.37	1	21
Osa02LNT0171700.1	osa-miR2921	Translation	4.5	12.096	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0171700.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0171700.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0171700.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0171700.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0171700.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0171700.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0171700.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0171700.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0171700.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401
Osa02LNT0171700.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0171700.1	2	yld2.1	Morphological trait	Seed	RM262	RM263

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus