>Osa02LNT0172200.1

TCCTGCACCATGGGCGTATGTACATCTCCTTATGGCATCTGTGCTTCCACTCCAATGTATTCTCCAAACAGTTGAATGTAAAGTACATGGATCTGGCTTGATTTCTCAGGAAGAATCAGGTACAAATTCACATCATTCTGGAATAGAAACCGCACATTTCGGGCCCTGGAGAATGCTCTCCTGTGTCACTTCGTAAAATGATTTCACCAGTCACCAAAGTTCCCAGACTTAAGAACTCCTTGATCTTAATGCCGTGGAAAAGCAGTCACCACCACTGAAAAATTAGATGCAAGACAAATGGGTGATAACAATTGATTCTAGGGCACTCTGTACCACAAAGCCCTCTAATTATGCAACCATATGGTAACAGAGACACTTTAAAGATTTTGTTTCCCCTCCAAAAACAGGATTTAATGGTTTCTTCTTGACATGATATGTTGCAGTACAGGAGAGAGGTTTGCAAGATTTTGGAAGCTGCCTGTGACTATGTCCTAAAAGAAGAGTCAAACAACCAAGCCAGTCATGAAATTGAGGCAATATCTTTAACATGAAAAACTGTAGTTGTAAACCCATGTGTAGTTCCCACCGACAGATACTTCCAGCACATTGAAGAAGATGGCAGATGATCCAAATGAACTTCATCTCCACAATATATATGTACTTACTGCATGATACAGAAAAGATCAAACACTGTTACTTCAAACTAACAAAAGAATTCAAGAGAAGCTGACTTTTCTAAACCTTATTTTCTTATCGTACATGAACAACACACAGAAGTATGGTAAACTGTAAGGAGGTGCTAATTATTATTTACAGCTACTAAAGTATGACGCCCTGGTTTTTTACAGTAACACTATAATCACAACATCACGCATTCACACTTCTTTTTAGCCGGGATGGCCGAAGGATGTATTCACACTTTCCCTGACTTAAACTCGCTTTCAAGTTTCTTCAGCTTTGTCTCTTGCACTTTGAGATCCTGTTCGAGTTTCTTGATCTTTGCTTCTTGCTCCTTTGCTGTTAGAGTGAGGGTTCTGTTATCTAAAGCCCCAGAGAGTTCATTCAGTGACTGGGCCTCCGGGAGCAGGAACGATACGCCCGCCCAGCCCAGCCTCGAGTTCGCGGCCGGCGATACGGCGCCGCGCAGCGCTGGAGAGTCAGAGACCTCGCCGGAGGAGAGCGCGTCGCGTCAGCGCCACGGGGAGGGGGAGAGAGAAGAAGGCCCACGAGAAGAG

Explanation	CPC Score
noncoding (weak)	-0.0165313

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0172200.1	2	23723307	T	C
Osa02LNT0172200.1	2	23723962	T	C
Osa02LNT0172200.1	2	23723973	T	C
Osa02LNT0172200.1	2	23723985	T	C
Osa02LNT0172200.1	2	23725935	A	T
Osa02LNT0172200.1	2	23725987	G	C
Osa02LNT0172200.1	2	23726111	C	T
Osa02LNT0172200.1	2	23726798	A	G
Osa02LNT0172200.1	2	23727643	A	C
Osa02LNT0172200.1	2	23727794	T	C
Osa02LNT0172200.1	2	23727963	G	A
Osa02LNT0172200.1	2	23727966	T	C
Osa02LNT0172200.1	2	23728380	C	T
Osa02LNT0172200.1	2	23728909	A	G
Osa02LNT0172200.1	2	23728943	A	C
Osa02LNT0172200.1	2	23728701	T	C
Osa02LNT0172200.1	2	23725494	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0172200.1	osa-miR5828	Cleavage	4.5	13.469	1	21
Osa02LNT0172200.1	osa-miR417	Cleavage	4.0	12.605	1	21
Osa02LNT0172200.1	osa-miR437	Cleavage	4.5	13.973	1	21
Osa02LNT0172200.1	osa-miR1428b	Cleavage	5.0	11.105	1	21
Osa02LNT0172200.1	osa-miR1428c	Cleavage	5.0	11.105	1	21
Osa02LNT0172200.1	osa-miR1428d	Cleavage	5.0	11.105	1	21
Osa02LNT0172200.1	osa-miR2103	Cleavage	3.5	22.036	1	22
Osa02LNT0172200.1	osa-miR5490	Translation	4.0	16.381	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0172200.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0172200.1	2	nan	Others	Others	C424	G45
Osa02LNT0172200.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0172200.1	2	qPTD-2	Morphological trait	Panicle/flower	C424	G45
Osa02LNT0172200.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0172200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0172200.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401
Osa02LNT0172200.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0172200.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0172200.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0172200.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0172200.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0172200.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0172200.1	2	qRPA-2-c	Resistance or Tolerance	Other soil stress tolerance	C424	G45
Osa02LNT0172200.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0172200.1	2	Sn2a	Morphological trait	Dwarf	C424	G45

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus