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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0173700.1

TAAGTGCTGCTAAGCCAACATCAGTAATCTGCCGATTGTCAAGATTAACTGACTTCAGTGAATTCAGTGCAGATATCTTCTTCATACCGGTATCAGTAACTAACGTAAACGAGAGATTGATGCTTTCCAAATTCCGAAGGCCTGTAAAAGTTTAATAGCTTTCCAATCAAATGCTTCAAATGCCCGTGCAACGACAACCAAATACAGATAATAACAAAAATAACTGCAGAGGATTTGTGATGTAGCAGGTTGTGCCAGTTAAGCATTATAATCGGATTGAGAAAACTGTACAAAAATCGTTGCACAACTTGACAAGTTTTCTAAGATGATCAGACATAACAAGGATACGATGAGAGCATGTATTAATCATTTCACTTTTCTGAACATTCACTGGTTGCAAACATATTATTCAGTAACTGTTCACATGCTAGATACTACAAATCTACAATACATGCAGTAAAGAGATTAAGAAAATAAAATGATAAAAACAATCACAAGATGCACATAAAACTGTAGCATTAACACATTTATGTTTTGCCACTTGCCGAAAACACTTCATAAAAGTAATCTTGTACATTATTCATGCCAAAGATGCAGAATAAGTCCTATTATCCAGTGTTTTACAACATGAATGACATTGCATGGCACTTAACTGCTAAAAAGGGTTAGAGCTAGAAATATTATTGTTCATAAGTGAAAACAGACCAGATAGATGCTGGAGTCCACTGCTTCCAACTTCGGTGTCAGATAGCTCCAAACTTTTCAAAAGCATAAGGCCTCTCAGATGTAATAAGCCTTCATCTCCAACCTTGCATGAGTCCAAGTTTAGAGATTCCAAATTGATCAACTCTAGAAGCAGCAAATGTTACCAGTTAGCTACCCAATAATAGTTGTGTGACTTTAAAGTGATATTTCAGTTTCTATGTACACAACACAATGTACCACAAAATACCATGCTCTATCTTCTTTTTCTCTCCAGTCTATGATAACATTCTTGAGAAATATATATAACATATCAATCAGTATAATGCCTCTTTTATTCCAATAATTTGGCATTGAAAGCTCAAACCACAATCAATTTGCCAATTTCAAAATTGCATGGTTAATATTACGAACTTCTACCAGAAATGTCACTGTTTCATGATAAATATCACCAAGTTCATTTCTCCATCCAAATATATTTTTAAAATCCTTACAGGAAATATTCACTAGTGCCTACTGGCTAACATAATGAAGCCAGATATATTGCTTAAACAACAGAGAAAAAATTGACTGCACCACTTATATTTCCTGCATAAACATCCATATTCTTAAATGTAAATAAAGTTCTAACAAGAAC

Coding Potentia
Explanation CPC Score
noncoding -1.29258
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0173700.1 2 24169651 A G
Osa02LNT0173700.1 2 24168774 T C
Osa02LNT0173700.1 2 24168951 A G
Osa02LNT0173700.1 2 24169022 A G
Osa02LNT0173700.1 2 24169465 T C
Osa02LNT0173700.1 2 24169600 C T
Osa02LNT0173700.1 2 24169752 G T
Osa02LNT0173700.1 2 24169802 A G
Osa02LNT0173700.1 2 24169822 A G
Osa02LNT0173700.1 2 24169842 T C
Osa02LNT0173700.1 2 24170341 A C
Osa02LNT0173700.1 2 24168757 G C
Osa02LNT0173700.1 2 24169187 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0173700.1 osa-miR435 Cleavage 4.5 21.893 1 20
Osa02LNT0173700.1 osa-miR2921 Translation 5.0 6.922 1 24
Osa02LNT0173700.1 osa-miR1862f Cleavage 4.0 15.827 1 20
Osa02LNT0173700.1 osa-miR1862g Cleavage 4.0 15.827 1 20
Osa02LNT0173700.1 osa-miR5071 Translation 4.5 8.013 1 21
Osa02LNT0173700.1 osa-miR5830 Translation 4.5 11.485 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0173700.1 2 qRPA-2-c Resistance or Tolerance Other soil stress tolerance C424 G45
Osa02LNT0173700.1 2 Tiller number Morphological trait Culm/leaf R26 C424
Osa02LNT0173700.1 2 Sn2a Morphological trait Dwarf C424 G45
Osa02LNT0173700.1 2 qRTT2-1 Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0173700.1 2 nan Others Others C424 G45
Osa02LNT0173700.1 2 nan Resistance or Tolerance Drought tolerance RG157 RZ318
Osa02LNT0173700.1 2 qPTD-2 Morphological trait Panicle/flower C424 G45
Osa02LNT0173700.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0173700.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0173700.1 2 qPN2 Morphological trait Culm/leaf RZ961 RZ401
Osa02LNT0173700.1 2 nan Resistance or Tolerance Insect resistance RG157 RZ318
Osa02LNT0173700.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0173700.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0173700.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0173700.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0173700.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus