>Osa02LNT0173900.1

AAAAATAATTAGCCTTCATCCCCTGTAGCTGGACAAGGCAAGCCTCTCTAAAATCAGGTGAACATCTGTGAATATCTCATAACATCATCTACATACACTTCTGTACCCTCAACATTCATCGAAGTACCATCTGCTAACAGAATAAACCTGGACCAAAAAAAAAAAACAATAGAACAAGGTATACATCGGACTGGACTACCACCTTAGGCCATCAAGACGCACAGAAGCCTCCCTGATGCCATCCATAGCAGAGCACAAACCAAATAATGGAAGATCAGAAGTGCACAAGTCATTTGGGTTTCCTTCAGCTAACATGAAGCTGCAGTGATCTTCCAAATCATTGTAAGTATTTTCCTCTGACATGAAGCCAAGTACAGCTCCAAAATCATCATCATGAGATTGGAGATGATGCACTGATGACCACAATTCTGTGGAAGAGTCACACAAGCCTTTTCCATCTTGCTTACAAGGATGATCTGTGTATGGCGATAGAGAGTTCAAACAAGCACCGTTTGCATCCATGAACAAAGTACTACTGCTGTCCTTTGGAGGCATATATCTGAGATGATGTTGATGATCCAGAGTTCCAGATATGTAGTTTGAAAAGCTTGTATAAGTGAATTTCGCAGGTAACTGATCCAATTCCTGTATAGGCCCAATATCAGAATTATCAAAAATCTCTGCCTCCTTCGAATATTTCTCCTCCAGTCCAGCCAAAGAAGTTTCATGCAACCTCTTTGAGCCCAATTGAAAAGGATGCTCTGAAGTTGAAAATATGGAATTCAGACAACTCATGCTTGCATTCGACACAATATCGTTGCTCTCACTTGCAGCTAAGTTGGAGATATAGCTAAAATCACTGTGATTGAGAATTCCATTTCTAGTGTCCAAAAAGCTTGAAGCAGAACATTTTGCATATAACTGATCAAAGCTAGATAGAAGTCCAGTGTCAAAATTAACTAATTCTGACCCATGTTGGTCTTGCCTTTCCAGTCCAACTGAACTAGAAGTAAATTGCTCTAGAAGTTCAGCACCATAATTATGAGAGAATCTTGCCTCCTTTTGGCCTTGCCTATCCAATCCAACTGGAGGAAAACATTGTTCCAAGGGGTTACAAGGGTCAGGTCGCCGGTAAGTGTTTGATATTTCATATGGTACCACATGTGTCTCCTCAATCTGACAGGGGGTGAAAAATCTATTTGGAATGGATCCAGAGAATCCTTGTGACAACATAGGCACCCATCCATGATAAGTGCATGGCCTTGTTTCAACATTACAGTTCAACTCAGTAGCTGAAGCCAGTTTGCCTTCGGAGTGTGGTTGGACATCCTCTAGCAACAAATTAGAAACCTGGTTGTGAGCAGTGTCTCTTTTCCAACCAGAATTTGGAAGACCCACAGTGTGCACCCATGGTAATGCCATGCTCTCACGTGCTTCATTGCCCCTGTGAGGTAAATCAATTTTCCAATCAAGAGAACCTGAAGGGCCCTGATTGTATCCCCATGGCAAAGCCATGAATTGACGGGATTCCTGGGTTGCATAAGAGGATGACTCTTTTTCTGTTCTCAGTTTAGTTCGCAAATCAAAGTCACTAATCCTGTAATCAAGCATATTTTCAAAATGGCATCCGGTGCCAGTAGGAGTATGGCCACAGACCTTCATCATTCTCATGGACTCCTTACGGTGCTTTTTTATCATGCTGTTGGCGCCTAGCCTTTGCAGGATGTCAGCAAAAAATTCTGATCTTCTCTGCAAAAACTCAGAACTTTCCATTGACATAGTTTTTGCAGCTAGCTTTAATAATTTTCCTCTCTTTTCTGAAAAGATCCGTCCACTCCAAGGTTCTATGTCAGTGTTTCTTGAAATTCCTACGGCTTCAAACGAAACCTGAGTTATGGGTGTGTGAACATGAACAGTCAAGTAATCATGTGGGTTCAACTGAGGTGTATCATTATTGCCATGTTCAGAATGGGAAGCTTTCGCATTGACTTGCTCATGGTAGATTTCTTCATTCTTACAAGGTGTAGCGGGGGTCTCCTCAGAAGAGAAAGTGCTCTTCTGGGCAGGGAGCTTTCTGCCTGGCATTACATTATGCGATTCCATCTGTTTTTCTTCGTTTTGTTTGGAGAAAGAATGAGGTCTACAGCCTGACTGCTCCCACAATTTCTTAAAGAATTTGTATTCAGTAGTTTTCGCATCACAACCTTGGGGTCTTTTGCCTGTGTTAGCATCCTGTCTCACGCATATCTGATGACTGCTGGCTTCACTAGCAAATCGAACCCTTTTCCTTGGCCTCCCACCTGGGGAGGAGGGCTCTGGAAGGGGCCTCGGCACCGCTGGGGCCTGGAAGGACGGGCCACGCGGGGGCCGTGGGGGCTTCATAGAAGAGGAGCCGGAAGGGACACTTTTAGGGTTCCGACGCCGGAGGCGATCCATCGCCACCGCCTCCGCCGCCGCCTCGGTCGGTGCGCGCCAAAACCCGAGGAAAAGCCTTCGCCCTTTGGCAATTTTCTC

Explanation	CPC Score
noncoding	-1.0888

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0173900.1	2	24485048	C	T
Osa02LNT0173900.1	2	24483375	A	G
Osa02LNT0173900.1	2	24483386	T	C
Osa02LNT0173900.1	2	24483423	T	C
Osa02LNT0173900.1	2	24483425	G	A
Osa02LNT0173900.1	2	24483753	A	G
Osa02LNT0173900.1	2	24483819	G	A
Osa02LNT0173900.1	2	24483916	C	T
Osa02LNT0173900.1	2	24484011	G	A
Osa02LNT0173900.1	2	24484067	A	G
Osa02LNT0173900.1	2	24484089	C	T
Osa02LNT0173900.1	2	24484144	A	G
Osa02LNT0173900.1	2	24484159	G	T
Osa02LNT0173900.1	2	24484342	G	A
Osa02LNT0173900.1	2	24484366	T	C
Osa02LNT0173900.1	2	24484448	T	C
Osa02LNT0173900.1	2	24484524	T	G
Osa02LNT0173900.1	2	24485345	T	G
Osa02LNT0173900.1	2	24485446	A	G
Osa02LNT0173900.1	2	24485500	A	G
Osa02LNT0173900.1	2	24485510	A	G
Osa02LNT0173900.1	2	24485692	A	G
Osa02LNT0173900.1	2	24485747	T	C
Osa02LNT0173900.1	2	24485801	C	T
Osa02LNT0173900.1	2	24485805	T	C
Osa02LNT0173900.1	2	24486069	G	A
Osa02LNT0173900.1	2	24486130	G	A
Osa02LNT0173900.1	2	24486198	C	G
Osa02LNT0173900.1	2	24485411	A	G
Osa02LNT0173900.1	2	24486434	T	C
Osa02LNT0173900.1	2	24486450	A	G
Osa02LNT0173900.1	2	24486452	T	A
Osa02LNT0173900.1	2	24486499	T	G
Osa02LNT0173900.1	2	24486575	T	C
Osa02LNT0173900.1	2	24486651	G	T
Osa02LNT0173900.1	2	24486937	A	T
Osa02LNT0173900.1	2	24486964	A	G
Osa02LNT0173900.1	2	24487352	A	G
Osa02LNT0173900.1	2	24487477	G	C
Osa02LNT0173900.1	2	24487497	T	C
Osa02LNT0173900.1	2	24486795	A	G
Osa02LNT0173900.1	2	24484988	T	C
Osa02LNT0173900.1	2	24485410	T	C
Osa02LNT0173900.1	2	24486571	A	G
Osa02LNT0173900.1	2	24486744	A	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0173900.1	osa-miR169i-5p.2	Translation	4.5	17.804	1	22
Osa02LNT0173900.1	osa-miR415	Translation	4.5	17.498	1	21
Osa02LNT0173900.1	osa-miR1428e-3p	Translation	5.0	16.388	1	21
Osa02LNT0173900.1	osa-miR2099-5p	Cleavage	5.0	18.713	1	22
Osa02LNT0173900.1	osa-miR5490	Cleavage	5.0	11.025	1	21
Osa02LNT0173900.1	osa-miR5523	Translation	5.0	17.779	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0173900.1	2	nan	Others	Others	C424	G45
Osa02LNT0173900.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0173900.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0173900.1	2	qPTD-2	Morphological trait	Panicle/flower	C424	G45
Osa02LNT0173900.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0173900.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0173900.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401
Osa02LNT0173900.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0173900.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0173900.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0173900.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0173900.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0173900.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0173900.1	2	qRPA-2-c	Resistance or Tolerance	Other soil stress tolerance	C424	G45
Osa02LNT0173900.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0173900.1	2	Sn2a	Morphological trait	Dwarf	C424	G45

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus