Transcript

Sequence

>Osa02LNT0174200.1

GCACATAAATTGCTCCAGAATAATAAGACTAATGGTAATACATCAATTATAGATAATGAACATTGAAACCAAAATTCTGCACATGCACTTTCCTCTGTTATTCAGTTATATCAAAGCAGAGTTTAGCTTCATCCCAGGGACCATTGATCTCAAACTTGTATTCCTGAATTCTTATAAGCCAGTAAGGGCAAACAATTGAGATAAAAACAAGCAGTGCCAGCAGTAGGATGAAGAACATGTGATGCAATTGGTATGTGACGCCTAGGGTCATGATCATCAGAGCAAAGGAGAAGAGCAGATGAAGTCTAAGAGAGAACTTCTTAATACAAAACGCGACGAGGGGCACAAACAGGAAGATCTGCAAGGAGAATAGCATGATTGCAAAGACATGCAGCCTAGATGGCAGGCGCGAAGCTACAAGGACGGATGCTACTATCGATGCATTCAAGGAGATATTGCTGGTCAATTTTGGGTTGTTGAGTGCACCAGGTGGCCTTATAGTTGAACCAGAATAATCATGCAGAAAGAGGTGAACCAACAGAAGGCATACAGCAAGTGCCCATATGGAATCTGAACTGATGGACCTAGTGAGGGTTTGATAAATCGGTGCCAAAACATACAGACCACTGATGAAGAATGATGTATTGAGGACATACTTGGAGAGAAGCTTGAGCGAGAACGGACTTGCCGTGAGCAAGAGCATCGAAAACCCGGCAAGAAGTAGACTAGTGTCTAGCTTCAAAAGAGTGACCTCATCAATGACCAAGTTCAGTGTATAGGTCCATGTTGAAACCACAAGAGCAACAATGCAGAGATACTGAGATATGGAGACCGAGTCGATCATCACTTTCAGGAGGTCCCTCTTGACAACATTGGCGTTCATAACCATCTCCTCAAGGAATGACTCGTCCGTGTGGTTATCGTCATAGCCTGGCTGCCTTCCCCCATAGGCAACTTTTCTCCACTTTGGTCGACTCTCATTGTTCATATTGTATTTGCTACTATGTTAACAACCAGGGGCGGATCCAACTTGGGAAACTTTTGGGGGGAACAAACAAACTGCTACTTGTATTAAGGTTAAGGCTCTGAAATTAAGAGAAGGGCTTCTTCCAGATCAGGATCCCCTCCCATCCCCTGCTCTGCTCGCCAGATGGAGACCGCCGCCCCTCGCCTGTTGTGTTCAGCCGCTACTCGTCTTGGCGCAAGGAGCGG

Coding Potentia

Explanation	CPC Score
noncoding	-1.19015

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0174200.1	2	24773810	T	C
Osa02LNT0174200.1	2	24773978	T	G
Osa02LNT0174200.1	2	24774062	T	C
Osa02LNT0174200.1	2	24774560	T	C
Osa02LNT0174200.1	2	24774459	A	G

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0174200.1	osa-miR426	Cleavage	5.0	12.781	1	21
Osa02LNT0174200.1	osa-miR426	Translation	5.0	13.278	1	21
Osa02LNT0174200.1	osa-miR1852	Translation	5.0	15.012	1	21
Osa02LNT0174200.1	osa-miR1860-3p	Translation	5.0	16.807	1	22
Osa02LNT0174200.1	osa-miR2055	Translation	3.0	16.725	1	21
Osa02LNT0174200.1	osa-miR2871a-3p	Cleavage	4.5	8.001	1	21
Osa02LNT0174200.1	osa-miR2871b	Cleavage	4.5	8.001	1	21
Osa02LNT0174200.1	osa-miR5082	Cleavage	4.5	21.406	1	24
Osa02LNT0174200.1	osa-miR5155	Translation	4.0	16.145	1	24

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0174200.1	2	qPN2	Morphological trait	Culm/leaf	RZ961	RZ401
Osa02LNT0174200.1	2	nan	Resistance or Tolerance	Insect resistance	RG157	RZ318
Osa02LNT0174200.1	2	yld2.1	Morphological trait	Seed	RM262	RM263
Osa02LNT0174200.1	2	qSS-2	Physiological trait	Sterility	RM301	RM263
Osa02LNT0174200.1	2	qSB-2	Resistance or Tolerance	Sheath blight resistance	G45	RZ273
Osa02LNT0174200.1	2	nan	Physiological trait	Eating quality	C621	C370
Osa02LNT0174200.1	2	qCSH2	Resistance or Tolerance	Cold tolerance	RM262	RM263
Osa02LNT0174200.1	2	qRTT2-1	Resistance or Tolerance	Drought tolerance	RG157	RZ318
Osa02LNT0174200.1	2	qRPA-2-c	Resistance or Tolerance	Other soil stress tolerance	C424	G45
Osa02LNT0174200.1	2	Sn2a	Morphological trait	Dwarf	C424	G45
Osa02LNT0174200.1	2	Tiller number	Morphological trait	Culm/leaf	R26	C424
Osa02LNT0174200.1	2	qPH-2	Morphological trait	Dwarf	RG324	RG83
Osa02LNT0174200.1	2	qPTD-2	Morphological trait	Panicle/flower	C424	G45
Osa02LNT0174200.1	2	qGRH-2	Resistance or Tolerance	Insect resistance	C621	C601
Osa02LNT0174200.1	2	nan	Others	Others	C424	G45
Osa02LNT0174200.1	2	nan	Resistance or Tolerance	Drought tolerance	RG157	RZ318

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus